Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 1.7e-58 229.2 123 100.0
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 3.8e-45 184.9 114 84.2
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.0e-42 175.3 116 81.0
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.9e-42 174.9 119 79.8
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 6.7e-42 174.1 117 76.9
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.5e-41 172.9 119 77.3
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.5e-41 172.9 123 76.4
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 1.5e-41 172.9 114 79.8
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.5e-41 172.9 117 76.9
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 1.9e-41 172.6 120 77.5
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 4.3e-41 171.4 118 77.1
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 1.6e-40 169.5 118 72.9
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.6e-40 169.5 113 81.4
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 2.8e-40 168.7 112 81.2
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.7e-40 168.3 117 76.1
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 4.8e-40 167.9 116 76.7
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 4.8e-40 167.9 120 76.7
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 8.1e-40 167.2 116 77.6
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.1e-39 166.8 114 79.8
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.1e-39 166.8 114 79.8
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.1e-39 166.8 114 79.8
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 1.1e-39 166.8 114 79.8
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 1.4e-39 166.4 116 75.9
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.8e-39 166.0 116 75.9
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.4e-39 165.6 114 78.9
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.4e-39 165.6 116 76.7
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 3.1e-39 165.2 114 78.1
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 3.1e-39 165.2 117 75.2
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 4.0e-39 164.9 114 76.3
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 4.0e-39 164.9 114 77.2
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 5.3e-39 164.5 117 75.2
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 5.3e-39 164.5 118 78.0
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 5.3e-39 164.5 116 75.9
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 5.3e-39 164.5 111 80.2
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 6.9e-39 164.1 114 78.1
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 6.9e-39 164.1 114 78.1
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 6.9e-39 164.1 116 75.0
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 9.0e-39 163.7 119 74.8
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 9.0e-39 163.7 120 72.5
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 1.2e-38 163.3 116 77.6
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.2e-38 163.3 112 78.6
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.5e-38 162.9 118 74.6
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 1.5e-38 162.9 114 75.4
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.5e-38 162.9 114 79.8
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.5e-38 162.9 114 75.4
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 2.6e-38 162.2 115 76.5
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 4.5e-38 161.4 116 75.0
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 5.8e-38 161.0 116 76.7
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 5.8e-38 161.0 114 74.6
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 7.6e-38 160.6 116 74.1
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 7.6e-38 160.6 117 75.2
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 1.3e-37 159.8 116 76.7
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 1.7e-37 159.5 116 72.4
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 1.7e-37 159.5 116 72.4
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 2.2e-37 159.1 119 73.1
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 2.9e-37 158.7 114 71.9
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 2.9e-37 158.7 114 71.9
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.9e-37 158.7 118 69.5
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 2.9e-37 158.7 118 69.5
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 3.8e-37 158.3 117 70.9
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.8e-37 158.3 118 70.3
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 3.8e-37 158.3 116 74.1
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 6.4e-37 157.5 115 76.5
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 6.4e-37 157.5 117 73.5
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 8.4e-37 157.1 116 73.3
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 8.4e-37 157.1 116 74.1
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 8.4e-37 157.1 114 72.8
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 8.4e-37 157.1 115 74.8
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.1e-36 156.8 117 73.5
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.1e-36 156.8 116 72.4
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 1.4e-36 156.4 114 75.4
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 1.4e-36 156.4 114 75.4
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-36 156.0 119 72.3
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 1.9e-36 156.0 114 75.4
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 2.4e-36 155.6 119 72.3
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 2.4e-36 155.6 114 74.6
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 2.4e-36 155.6 114 74.6
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 3.2e-36 155.2 115 73.9
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 3.2e-36 155.2 114 72.8
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 4.2e-36 154.8 119 72.3
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 4.2e-36 154.8 119 72.3
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 4.2e-36 154.8 119 72.3
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 5.5e-36 154.5 114 71.1
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 5.5e-36 154.5 119 72.3
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 5.5e-36 154.5 117 69.2
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 5.5e-36 154.5 117 70.9
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 5.5e-36 154.5 119 71.4
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 5.5e-36 154.5 114 74.6
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 9.3e-36 153.7 109 78.9
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 9.3e-36 153.7 120 72.5
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.2e-35 153.3 116 72.4
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 1.6e-35 152.9 118 73.7
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.6e-35 152.9 114 74.6
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 2.7e-35 152.1 120 72.5
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 6.0e-35 151.0 119 68.1
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 7.9e-35 150.6 119 70.6
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 7.9e-35 150.6 119 70.6
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 3.0e-34 148.7 115 73.0
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 3.9e-34 148.3 114 71.9
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 3.9e-34 148.3 114 71.9
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.5e-33 146.4 113 70.8
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.9e-33 146.0 133 63.9
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.6e-33 144.4 116 70.7
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 1.6e-32 142.9 120 65.0
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 2.8e-32 142.1 114 68.4
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.4e-31 139.0 152 54.6
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.0e-31 138.3 116 68.1
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 7.6e-30 134.0 105 72.4
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 7.6e-30 134.0 108 63.9
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 2.9e-29 132.1 91 74.7
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 1.1e-28 130.2 112 65.2
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 7.9e-27 124.0 116 56.0
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.5e-25 119.0 205 41.0
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.2e-24 115.9 116 56.0
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.8e-23 112.8 170 45.9
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 9.0e-23 110.5 116 56.0
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 7.6e-22 107.5 77 64.9
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 1.4e-20 103.2 68 76.5
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 3.2e-20 102.1 121 52.1
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 1.8e-18 96.3 101 52.5
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.1e-15 87.0 73 71.2
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 2.2e-13 79.3 79 51.9
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 1.2e-11 73.6 119 44.5
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 6.1e-11 71.2 81 51.9
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 5.1e-10 68.2 63 63.5
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 9.1e-07 57.4 47 76.6
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 4.5e-06 55.1 42 76.2


User provided reference genes

Program Settings