Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 0.0e+00 1555.8 860 100.0
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 8.1e-219 764.6 717 58.4
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 7.1e-215 751.5 732 57.5
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.9e-207 726.9 732 56.3
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.5e-206 722.6 720 56.8
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 3.3e-204 716.1 720 56.2
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 9.3e-199 698.0 734 53.7
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.1e-198 696.8 734 53.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 5.6e-196 688.7 743 51.4
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 8.1e-195 684.9 758 51.3
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 3.1e-194 682.9 746 52.3
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 3.2e-191 672.9 835 48.0
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.3e-188 662.9 731 53.6
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.6e-187 660.6 710 51.7
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.1e-187 660.2 736 52.9
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.8e-187 659.8 720 52.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.1e-186 657.9 753 49.7
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.4e-183 647.5 718 51.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.5e-180 636.7 702 49.7
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 2.0e-177 627.1 723 50.6
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.7e-176 624.0 764 48.2
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.9e-176 623.2 725 48.7
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.9e-175 620.5 729 49.8
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-175 620.2 721 48.5
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 4.2e-175 619.4 724 48.3
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.7e-174 616.7 654 51.4
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.5e-174 616.3 766 47.0
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.0e-174 615.5 766 47.0
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.0e-173 614.8 877 43.3
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.8e-173 614.0 733 49.4
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 3.0e-173 613.2 720 48.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 6.7e-173 612.1 747 47.9
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.1e-172 611.3 713 48.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.3e-172 609.8 714 48.5
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 9.7e-172 608.2 712 49.6
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 9.7e-172 608.2 758 46.8
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.1e-171 607.1 721 48.4
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.4e-170 603.6 747 46.7
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.1e-170 603.2 714 47.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 5.3e-170 602.4 722 47.8
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 5.3e-170 602.4 722 47.6
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 5.3e-170 602.4 732 46.2
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 9.0e-170 601.7 732 46.0
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 5.9e-169 599.0 733 47.7
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.7e-168 597.4 735 46.7
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 2.9e-168 596.7 726 46.3
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 8.5e-168 595.1 735 45.2
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.4e-167 594.3 721 47.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.9e-167 594.0 662 50.2
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.1e-166 590.5 538 59.3
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.7e-166 590.1 709 47.1
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.6e-166 589.7 732 45.9
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.3e-165 587.8 725 46.5
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 3.0e-165 586.6 693 48.3
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.1e-165 585.9 734 47.1
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.5e-164 583.6 721 46.3
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 9.7e-164 581.6 766 44.8
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.7e-163 580.9 678 48.8
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 6.3e-163 578.9 755 44.4
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.3e-163 578.9 732 46.2
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 8.2e-163 578.6 657 49.2
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.1e-162 576.2 669 49.0
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.2e-161 574.7 750 45.1
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.0e-160 571.6 672 48.5
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-160 571.2 772 44.7
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 3.2e-159 566.6 654 48.6
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 7.2e-159 565.5 702 44.7
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.6e-158 564.3 658 49.2
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 4.6e-158 562.8 803 43.6
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 7.9e-158 562.0 715 44.9
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 8.8e-157 558.5 699 45.8
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 3.3e-156 556.6 629 50.1
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.1e-154 551.6 677 46.1
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.1e-154 551.6 714 45.0
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.4e-154 551.2 706 45.0
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.2e-153 548.1 710 45.4
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.2e-153 548.1 706 46.3
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.5e-153 547.7 647 50.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 2.0e-153 547.4 716 44.8
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 5.9e-153 545.8 707 44.8
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.0e-152 545.0 709 44.7
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 2.9e-152 543.5 707 44.7
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.9e-152 543.5 730 44.5
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 5.0e-152 542.7 707 44.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-151 541.2 718 44.7
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.4e-151 541.2 707 46.0
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.9e-151 540.8 718 44.8
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.1e-150 537.3 623 48.2
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 2.7e-150 537.0 631 48.8
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.6e-150 536.6 708 44.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.0e-149 535.0 768 41.9
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.0e-149 535.0 716 44.7
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 6.7e-149 532.3 750 45.2
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-148 531.2 718 44.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 3.3e-148 530.0 656 47.3
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 2.0e-145 520.8 652 46.3
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 3.2e-143 513.5 758 41.8
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.1e-142 510.8 764 42.3
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 2.7e-142 510.4 573 51.1
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 5.2e-141 506.1 780 40.8
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.8e-138 497.7 670 42.5
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 2.2e-136 490.7 695 43.0
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.9e-135 487.6 763 41.2
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 4.7e-134 483.0 736 40.9
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 8.0e-134 482.3 694 43.1
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 2.3e-133 480.7 611 46.8
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.2e-126 458.4 660 42.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 8.0e-126 455.7 660 42.6
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.2e-124 451.8 594 45.1
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.3e-123 448.4 654 41.3
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.3e-120 438.3 716 41.3
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.0e-116 424.5 681 40.2
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.0e-116 424.5 681 40.2
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.2e-110 402.9 554 45.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.2e-110 402.9 554 45.1
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.2e-105 388.7 354 56.8
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 3.0e-104 384.0 625 41.0
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 5.0e-104 383.3 429 57.8
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.2e-99 367.9 455 47.0
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 6.0e-97 359.8 473 47.6
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.9e-96 357.1 504 46.8
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.5e-95 355.1 448 48.0
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 5.6e-95 353.2 730 35.3
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.4e-93 347.8 826 32.7
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.1e-90 339.0 464 46.6
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.9e-90 338.2 464 46.3
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 7.1e-90 336.3 761 33.6
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.6e-89 335.1 502 43.4
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.9e-83 314.3 272 52.9
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.5e-81 307.4 330 52.7
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 9.9e-68 262.7 246 54.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.2e-66 257.7 643 34.1
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 3.7e-62 244.2 490 38.2
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 5.3e-61 240.4 336 39.0
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.6e-57 228.8 494 36.2
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 5.1e-56 223.8 324 45.7
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.9e-55 221.9 197 58.4
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.3e-55 220.7 223 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.1e-50 206.1 360 40.3
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 5.9e-44 183.7 142 57.0
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.7e-43 182.2 316 42.1
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 9.4e-42 176.4 141 56.0
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 9.1e-37 159.8 279 40.9
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.0e-36 158.7 149 53.0
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.5e-36 157.9 169 47.3
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 8.5e-35 153.3 231 44.2
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 5.5e-34 150.6 236 41.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 7.2e-34 150.2 119 56.3
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 8.8e-32 143.3 119 55.5
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-31 142.9 199 47.2
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.5e-31 142.5 151 45.7
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.3e-29 134.0 279 37.6
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.9e-27 128.3 244 38.5
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 2.1e-25 122.1 135 53.3
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 3.0e-24 118.2 613 23.8
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 4.0e-24 117.9 144 45.8
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 5.2e-24 117.5 102 52.9
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 5.2e-24 117.5 102 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.1e-21 109.8 130 43.8
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-21 109.8 115 47.0
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.1e-21 109.8 133 41.4
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 5.3e-21 107.5 233 34.8
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 4.2e-18 97.8 180 37.8
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.8e-16 92.4 73 67.1
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 2.3e-16 92.0 84 48.8
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 2.3e-16 92.0 84 48.8
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 2.3e-16 92.0 84 48.8
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.3e-16 92.0 185 40.5
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 8.8e-16 90.1 90 50.0
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 1.2e-15 89.7 84 47.6
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 2.2e-14 85.5 90 48.9
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 4.8e-14 84.3 82 48.8
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 6.3e-14 84.0 74 54.1
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 4.1e-13 81.3 75 60.0
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 9.1e-13 80.1 65 56.9
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 2.7e-12 78.6 87 42.5
Cre01.g057061 Chlamydomonas reinhardtii HOM05D003594 ORTHO05D004268 2.9e-11 75.1 667 23.2
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 6.6e-11 73.9 74 45.9
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 8.6e-11 73.6 74 45.9
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.5e-10 72.8 62 66.1
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.3e-10 71.6 57 61.4
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-07 62.4 57 50.9
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 9.8e-07 60.1 55 50.9
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 2.8e-06 58.5 129 38.0


User provided reference genes

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