Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 4.6e-169 597.8 306 100.0
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 3.7e-110 402.1 249 77.9
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 1.1e-104 384.0 262 71.0
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 1.4e-104 383.6 249 74.3
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 3.1e-104 382.5 250 74.0
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 4.0e-104 382.1 249 74.3
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 8.9e-104 380.9 271 69.4
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 2.0e-103 379.8 251 71.3
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.4e-103 378.6 251 71.3
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 6.4e-102 374.8 254 70.1
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 8.3e-102 374.4 250 72.4
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 3.2e-101 372.5 249 69.9
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 9.2e-101 370.9 249 70.3
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 1.2e-100 370.5 248 70.6
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 1.6e-100 370.2 232 76.7
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 2.1e-100 369.8 287 62.7
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.7e-100 369.4 249 69.9
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 4.6e-100 368.6 249 69.9
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 6.0e-100 368.2 303 62.7
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 7.8e-100 367.9 232 76.3
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.3e-99 367.1 249 69.1
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 1.7e-99 366.7 272 66.5
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 1.5e-98 363.6 250 69.2
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 1.9e-98 363.2 278 65.5
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 2.5e-98 362.8 282 63.8
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 9.5e-98 360.9 303 60.4
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.2e-97 360.5 268 65.3
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 1.6e-97 360.1 245 70.6
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 1.6e-97 360.1 301 60.5
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 3.6e-97 359.0 246 68.7
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 3.6e-97 359.0 248 70.6
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 6.2e-97 358.2 246 69.1
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 6.2e-97 358.2 246 69.1
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 6.2e-97 358.2 265 65.3
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 8.1e-97 357.8 246 69.5
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 1.1e-96 357.5 246 69.5
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.4e-96 357.1 301 59.5
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 1.8e-96 356.7 276 64.1
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 2.4e-96 356.3 246 68.3
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 5.2e-96 355.1 246 68.7
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 5.2e-96 355.1 246 67.9
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 5.2e-96 355.1 246 67.9
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 5.2e-96 355.1 249 68.3
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 8.9e-96 354.4 291 60.1
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 1.5e-95 353.6 276 64.1
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 1.5e-95 353.6 248 67.3
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 2.6e-95 352.8 248 68.1
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 3.4e-95 352.4 246 68.3
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 9.9e-95 350.9 286 60.8
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 9.9e-95 350.9 248 66.9
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.7e-94 350.1 248 66.1
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 1.7e-94 350.1 265 64.2
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 2.2e-94 349.7 246 67.5
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 2.2e-94 349.7 248 70.2
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 3.8e-94 349.0 286 60.8
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 3.8e-94 349.0 305 60.0
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 3.8e-94 349.0 264 64.4
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 3.8e-94 349.0 270 63.7
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 6.4e-94 348.2 265 63.8
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 8.4e-94 347.8 246 67.9
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 1.1e-93 347.4 246 67.5
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 1.9e-93 346.7 261 65.1
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 7.1e-93 344.7 280 62.1
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 7.1e-93 344.7 276 59.8
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 9.2e-93 344.4 249 68.3
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.1e-92 343.2 269 63.6
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 2.1e-92 343.2 299 57.5
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 6.0e-92 341.7 243 65.4
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 7.8e-92 341.3 241 68.5
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 1.0e-91 340.9 249 63.9
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 1.3e-91 340.5 249 65.5
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 1.3e-91 340.5 249 63.5
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 1.7e-91 340.1 307 59.3
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 1.7e-91 340.1 252 65.9
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 3.0e-91 339.3 283 62.9
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 5.1e-91 338.6 254 65.7
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 2.5e-90 336.3 274 61.7
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 3.3e-90 335.9 216 74.5
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 5.6e-90 335.1 251 63.7
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 7.3e-90 334.7 310 56.1
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 7.3e-90 334.7 285 60.4
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 1.1e-88 330.9 214 74.8
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 2.4e-88 329.7 211 73.9
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 3.1e-88 329.3 269 62.5
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 4.0e-88 328.9 274 59.5
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 1.2e-87 327.4 236 67.4
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 2.6e-87 326.2 270 61.1
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 5.8e-87 325.1 213 70.9
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 3.8e-86 322.4 282 59.2
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 6.4e-86 321.6 221 68.3
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 6.0e-84 315.1 288 57.6
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.7e-83 313.5 214 68.2
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 9.6e-82 307.8 248 61.3
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 4.5e-79 298.9 189 74.1
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 5.8e-79 298.5 189 75.7
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 3.3e-74 282.7 251 55.8
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 3.3e-74 282.7 330 47.3
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 3.1e-72 276.2 253 56.9
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 1.3e-70 270.8 264 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 1.6e-68 263.8 259 52.9
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.0e-63 246.9 171 66.1
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 6.5e-62 241.9 208 55.8
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 8.4e-62 241.5 233 55.4
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 1.4e-61 240.7 252 50.4
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 4.2e-61 239.2 145 78.6
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 7.1e-61 238.4 222 55.0
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 5.5e-45 185.7 129 66.7
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 2.1e-44 183.7 236 42.8
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 3.6e-36 156.4 105 68.6
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.2e-21 106.3 65 80.0
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.2e-20 104.8 65 80.0
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 1.2e-20 104.8 65 80.0
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 3.0e-19 100.1 65 72.3
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 6.8e-19 99.0 65 67.7
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.6e-18 97.1 64 68.8
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 1.6e-15 87.8 248 30.6
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 5.4e-08 62.8 157 37.6
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 5.0e-06 56.2 33 75.8


User provided reference genes

Program Settings