Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G124 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.8e-90 335.9 167 100.0
ATR0736G153 Amborella trichopoda HOM05D012411 ORTHO05D011070 4.2e-23 112.1 162 44.4
ATR0736G026 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.7e-19 100.1 163 42.3
ATR1096G135 Amborella trichopoda HOM05D012411 ORTHO05D011070 7.7e-17 91.3 158 38.0
ATR1096G071 Amborella trichopoda HOM05D012411 ORTHO05D011070 6.5e-16 88.2 152 36.8
ATR1136G071 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.1e-15 87.4 165 37.0
ATR1136G141 Amborella trichopoda HOM05D011842 ORTHO05D011366 3.2e-15 85.9 150 38.0
ATR0794G151 Amborella trichopoda HOM05D013040 ORTHO05D011366 1.0e-13 80.9 165 35.2
ATR1096G074 Amborella trichopoda HOM05D012411 ORTHO05D011070 4.4e-12 75.5 119 41.2
ATR0594G199 Amborella trichopoda HOM05D015801 ORTHO05D011070 7.5e-12 74.7 149 36.9
ATR0746G001 Amborella trichopoda HOM05D013040 ORTHO05D011366 1.3e-11 73.9 157 31.2
ATR1136G082 Amborella trichopoda HOM05D011842 ORTHO05D011366 3.7e-11 72.4 161 39.1
ATR0736G009 Amborella trichopoda HOM05D013040 ORTHO05D011366 6.3e-11 71.6 155 38.1
ATR0763G270 Amborella trichopoda HOM05D011842 ORTHO05D011366 8.2e-11 71.2 171 33.3
ATR0681G217 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.8e-10 70.1 156 35.3
ATR1096G136 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.8e-10 70.1 129 39.5
ATR1136G003 Amborella trichopoda HOM05D011842 ORTHO05D011366 7.0e-10 68.2 157 36.3
ATR1096G102 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.2e-09 67.4 118 39.0
ATR1127G193 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.2e-09 67.4 148 35.1
COL.COLO4_14882 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.2e-09 67.4 165 33.3
Rhsim02G0109800 Rhododendron simsii HOM05D002809 ORTHO05D004563 2.0e-09 66.6 123 32.5
arahy.Tifrunner.gnm1.ann1.N9LGBL Arachis hypogaea HOM05D000007 ORTHO05D000017 2.7e-09 66.2 153 32.7
ATR0075G023 Amborella trichopoda HOM05D028407 ORTHO05D011070 4.5e-09 65.5 161 35.4
Eucgr.H02734 Eucalyptus grandis HOM05D000007 ORTHO05D000017 4.5e-09 65.5 171 32.7
Migut.F01808 Erythranthe guttata HOM05D000007 ORTHO05D000017 5.9e-09 65.1 174 29.3
Oeu041630.1 Olea europaea HOM05D000007 ORTHO05D000039 5.9e-09 65.1 132 31.8
Sed0024551 Sechium edule HOM05D000007 ORTHO05D000039 5.9e-09 65.1 167 33.5
ATR0580G250 Amborella trichopoda HOM05D007162 ORTHO05D007631 7.7e-09 64.7 151 31.1
HPP92_017256 Vanilla planifolia HOM05D007162 ORTHO05D007631 7.7e-09 64.7 167 32.3
ATR0598G036 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.3e-08 63.9 158 31.6
ATR0681G100 Amborella trichopoda HOM05D015022 ORTHO05D011070 1.3e-08 63.9 164 29.3
Eucgr.B00632 Eucalyptus grandis HOM05D000007 ORTHO05D007631 1.3e-08 63.9 151 33.8
Aqoxy3G03466 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 1.7e-08 63.5 138 32.6
Ciclev10006734m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.7e-08 63.5 160 28.1
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.7e-08 63.5 160 31.2
ATR0730G093 Amborella trichopoda HOM05D035754 ORTHO05D031090 2.2e-08 63.2 166 32.5
Eucgr.H02735 Eucalyptus grandis HOM05D000007 ORTHO05D000017 2.9e-08 62.8 146 34.9
Dinv18942 Davidia involucrata HOM05D008179 ORTHO05D009362 3.8e-08 62.4 144 31.2
ATR0043G022 Amborella trichopoda HOM05D013040 ORTHO05D011366 5.0e-08 62.0 158 31.0
arahy.Tifrunner.gnm1.ann1.PR6200 Arachis hypogaea HOM05D000007 ORTHO05D000017 5.0e-08 62.0 154 30.5
vmacro13637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.0e-08 62.0 166 31.3
Migut.F01803 Erythranthe guttata HOM05D000007 ORTHO05D000017 6.5e-08 61.6 172 31.4
Manes.09G122100 Manihot esculenta HOM05D000007 ORTHO05D000039 8.5e-08 61.2 161 29.8
PSO536G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-07 60.8 155 29.7
PSO832G1012 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-07 60.8 155 29.7
PSO832G3836 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-07 60.8 155 29.7
Pp3c10_20160 Physcomitrium patens HOM05D003005 ORTHO05D004563 1.5e-07 60.5 146 26.7
RcHm_v2.0_Chr3g0458821 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-07 60.5 144 29.9
Sabra18G0015000 Salix brachista HOM05D000007 ORTHO05D004974 1.5e-07 60.5 161 32.3
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 2.5e-07 59.7 157 31.2
Migut.F01805 Erythranthe guttata HOM05D000007 ORTHO05D000017 2.5e-07 59.7 165 29.1
Migut.L00223 Erythranthe guttata HOM05D000007 ORTHO05D000017 2.5e-07 59.7 166 28.3
Migut.L00613 Erythranthe guttata HOM05D000007 ORTHO05D000017 2.5e-07 59.7 166 28.3
Lj4g0007807 Lotus japonicus HOM05D000007 ORTHO05D000039 2.5e-07 59.7 150 30.7
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.5e-07 59.7 157 32.5
Medtr3g034180 Medicago truncatula HOM05D000007 ORTHO05D000017 2.5e-07 59.7 128 32.8
Sed0003446 Sechium edule HOM05D000007 ORTHO05D000039 2.5e-07 59.7 130 33.8
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 2.5e-07 59.7 149 27.5
FAN01G3104 Fragaria x ananassa HOM05D000007 ORTHO05D000399 3.2e-07 59.3 179 27.9
Hma1.2p1_0187F.1_g081920 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 3.2e-07 59.3 168 28.0
Cc03_g07530 Coffea canephora HOM05D000007 ORTHO05D000017 4.2e-07 58.9 164 32.3
COL.COLO4_24613 Corchorus olitorius HOM05D000007 ORTHO05D000017 4.2e-07 58.9 165 32.1
DCAR_029597 Daucus carota HOM05D000007 ORTHO05D000039 4.2e-07 58.9 166 28.9
Medtr3g009240 Medicago truncatula HOM05D000007 ORTHO05D000017 4.2e-07 58.9 126 29.4
Cfa000426 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.5e-07 58.5 163 29.4
COL.COLO4_09451 Corchorus olitorius HOM05D000007 ORTHO05D000039 5.5e-07 58.5 169 30.8
DCAR_031132 Daucus carota HOM05D000007 ORTHO05D000039 5.5e-07 58.5 123 35.0
Oeu028341.1 Olea europaea HOM05D000007 ORTHO05D000039 5.5e-07 58.5 165 25.5
ATR0681G080 Amborella trichopoda HOM05D015022 ORTHO05D011070 7.2e-07 58.2 168 32.7
CAN.G475.39 Capsicum annuum HOM05D000007 ORTHO05D000039 7.2e-07 58.2 159 32.7
AUR62037005 Chenopodium quinoa HOM05D000007 ORTHO05D000017 7.2e-07 58.2 123 34.1
Migut.F01807 Erythranthe guttata HOM05D000007 ORTHO05D000017 7.2e-07 58.2 164 28.0
Lj1C663T4 Lonicera japonica HOM05D000007 ORTHO05D000039 7.2e-07 58.2 178 28.1
Medtr2g024110 Medicago truncatula HOM05D000007 ORTHO05D000017 7.2e-07 58.2 153 30.1
Oeu025157.1 Olea europaea HOM05D000007 ORTHO05D000039 7.2e-07 58.2 163 27.0
PSO461G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 7.2e-07 58.2 132 27.3
PSO541G1237 Papaver somniferum HOM05D000007 ORTHO05D000039 7.2e-07 58.2 178 26.4
Pp3c3_32280 Physcomitrium patens HOM05D002809 ORTHO05D004563 7.2e-07 58.2 147 25.9
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 7.2e-07 58.2 174 29.3
TAR624G0325 Trochodendron aralioides HOM05D000007 ORTHO05D000017 7.2e-07 58.2 160 31.2
EL10Ac9g22695 Beta vulgaris HOM05D000007 ORTHO05D000039 9.4e-07 57.8 167 27.5
Haze_06491 Corylus avellana HOM05D000007 ORTHO05D000039 9.4e-07 57.8 157 29.3
MELO3C009392.2 Cucumis melo HOM05D000007 ORTHO05D000039 1.2e-06 57.4 171 29.8
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 1.2e-06 57.4 156 29.5
Migut.C00045 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.6e-06 57.0 192 26.6
Lsat_1_v5_gn_9_51481 Lactuca sativa HOM05D000664 ORTHO05D000491 1.6e-06 57.0 146 30.8
Medtr3g007360 Medicago truncatula HOM05D000007 ORTHO05D000017 1.6e-06 57.0 174 27.6
Medtr3g007410 Medicago truncatula HOM05D000007 ORTHO05D000017 1.6e-06 57.0 174 27.6
PSO063G1960 Papaver somniferum HOM05D000007 ORTHO05D000676 1.6e-06 57.0 162 26.5
PSO675G0305 Papaver somniferum HOM05D000007 ORTHO05D000039 1.6e-06 57.0 175 25.7
Sed0014031 Sechium edule HOM05D002809 ORTHO05D004563 1.6e-06 57.0 153 25.5
Dinv36838 Davidia involucrata HOM05D001394 ORTHO05D001237 2.1e-06 56.6 166 29.5
Eucgr.H02929 Eucalyptus grandis HOM05D000007 ORTHO05D000017 2.1e-06 56.6 163 27.0
Medtr1g068835 Medicago truncatula HOM05D000007 ORTHO05D000017 2.1e-06 56.6 160 32.5
PSO357G0199 Papaver somniferum HOM05D000007 ORTHO05D000676 2.1e-06 56.6 162 27.8
QL03p023798 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-06 56.6 45 53.3
QL12p021856 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-06 56.6 179 27.4
Rhsim12G0092200 Rhododendron simsii HOM05D002809 ORTHO05D004563 2.1e-06 56.6 155 29.7
Thecc.04G197200 Theobroma cacao HOM05D000007 ORTHO05D000017 2.1e-06 56.6 162 28.4
VMungo1309G0382 Vigna mungo HOM05D000007 ORTHO05D000017 2.1e-06 56.6 174 31.0
Cc05_g03750 Coffea canephora HOM05D000007 ORTHO05D000039 2.7e-06 56.2 169 29.6
COL.COLO4_14803 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.7e-06 56.2 166 27.7
MELO3C006930.2 Cucumis melo HOM05D000007 ORTHO05D000039 2.7e-06 56.2 131 34.4
Lsat_1_v5_gn_9_51201 Lactuca sativa HOM05D000664 ORTHO05D000491 2.7e-06 56.2 146 33.6
Medtr4g117750 Medicago truncatula HOM05D000007 ORTHO05D000017 2.7e-06 56.2 157 26.8
PSO832G1986 Papaver somniferum HOM05D000007 ORTHO05D000017 2.7e-06 56.2 155 28.4
PSO832G2113 Papaver somniferum HOM05D000007 ORTHO05D000676 2.7e-06 56.2 157 29.3
PSO832G3312 Papaver somniferum HOM05D000007 ORTHO05D000017 2.7e-06 56.2 155 28.4
Peaxi162Scf00299g00064 Petunia axillaris HOM05D020909 ORTHO05D020911 2.7e-06 56.2 157 29.9
QL03p023874 Quercus lobata HOM05D000007 ORTHO05D000039 2.7e-06 56.2 45 51.1
QL04p037150 Quercus lobata HOM05D000007 ORTHO05D000039 2.7e-06 56.2 150 26.0
QL09p021415 Quercus lobata HOM05D000007 ORTHO05D000039 2.7e-06 56.2 160 25.0
RcHm_v2.0_Chr5g0030031 Rosa chinensis HOM05D000007 ORTHO05D000039 2.7e-06 56.2 129 31.8
RcHm_v2.0_Chr5g0030551 Rosa chinensis HOM05D000007 ORTHO05D000017 2.7e-06 56.2 155 25.8
Sed0016657 Sechium edule HOM05D002809 ORTHO05D004563 2.7e-06 56.2 159 29.6
Thecc.04G270100 Theobroma cacao HOM05D000007 ORTHO05D000017 2.7e-06 56.2 146 33.6
TAR371G0448 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.7e-06 56.2 159 27.7
TAR371G0593 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.7e-06 56.2 159 27.7
vmacro06021 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.7e-06 56.2 134 32.8
AT3G23880 Arabidopsis thaliana HOM05D000007 ORTHO05D000017 3.6e-06 55.8 163 27.0
AUR62015025 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.6e-06 55.8 135 29.6
COL.COLO4_20026 Corchorus olitorius HOM05D000007 ORTHO05D000521 3.6e-06 55.8 158 26.6
Dinv06539 Davidia involucrata HOM05D000007 ORTHO05D000039 3.6e-06 55.8 165 30.3
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 3.6e-06 55.8 121 33.1
Migut.C00029 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.6e-06 55.8 189 27.0
FvH4_6g34412 Fragaria vesca HOM05D000007 ORTHO05D000039 3.6e-06 55.8 145 31.0
Lj1C663T3 Lonicera japonica HOM05D000007 ORTHO05D000039 3.6e-06 55.8 168 29.8
Mapoly0055s0081 Marchantia polymorpha HOM05D003005 ORTHO05D004939 3.6e-06 55.8 169 31.4
PSO541G6116 Papaver somniferum HOM05D000007 ORTHO05D000039 3.6e-06 55.8 175 25.1
QL09p021348 Quercus lobata HOM05D000007 ORTHO05D000039 3.6e-06 55.8 164 26.2
TWI77G0834 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 3.6e-06 55.8 171 28.7
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 3.6e-06 55.8 155 29.0
Atru.chr5.2396 Acer truncatum HOM05D000007 ORTHO05D000039 4.7e-06 55.5 169 30.8
ATR0598G185 Amborella trichopoda HOM05D011842 ORTHO05D011366 4.7e-06 55.5 152 31.6
Dinv07009 Davidia involucrata HOM05D000007 ORTHO05D000039 4.7e-06 55.5 161 26.7
Nitab4.5_0001338g0150 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.7e-06 55.5 164 26.2
PSO173G0165 Papaver somniferum HOM05D000007 ORTHO05D000676 4.7e-06 55.5 169 28.4
PSO782G2971 Papaver somniferum HOM05D000007 ORTHO05D000676 4.7e-06 55.5 100 37.0
Peaxi162Scf00526g00073 Petunia axillaris HOM05D000007 ORTHO05D000017 4.7e-06 55.5 159 28.9
Potri.018G007900 Populus trichocarpa HOM05D000007 ORTHO05D000039 4.7e-06 55.5 161 30.4
SalBow1G0678 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.7e-06 55.5 145 29.7
Zm00001eb387810 Zea mays HOM05D000007 ORTHO05D013340 4.7e-06 55.5 138 31.2
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 6.1e-06 55.1 160 30.6
AL3G38850 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 6.1e-06 55.1 163 27.6
Haze_07450 Corylus avellana HOM05D000007 ORTHO05D000039 6.1e-06 55.1 126 31.0
Medtr1g097560 Medicago truncatula HOM05D000007 ORTHO05D000017 6.1e-06 55.1 155 27.7
PSO832G1545 Papaver somniferum HOM05D000007 ORTHO05D000676 6.1e-06 55.1 159 28.3
QL08p017442 Quercus lobata HOM05D000007 ORTHO05D000017 6.1e-06 55.1 153 30.7
SalBow1G6074 Salvia bowleyana HOM05D000007 ORTHO05D000017 6.1e-06 55.1 145 29.0
Sc23g0006800 Simmondsia chinensis HOM05D000664 ORTHO05D000491 6.1e-06 55.1 152 30.3
GSVIVG01026027001 Vitis vinifera HOM05D000007 ORTHO05D000017 6.1e-06 55.1 153 27.5
Ah.03g138200 Amaranthus hybridus HOM05D000754 ORTHO05D012960 8.0e-06 54.7 155 29.0
ATR0598G102 Amborella trichopoda HOM05D015801 ORTHO05D011070 8.0e-06 54.7 158 29.1
Aqoxy7G01556 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 8.0e-06 54.7 162 26.5
Cfa000428 Carpinus fangiana HOM05D000007 ORTHO05D000039 8.0e-06 54.7 163 27.6
Dinv34988 Davidia involucrata HOM05D000007 ORTHO05D000039 8.0e-06 54.7 128 28.9
FAN14G2850 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.0e-06 54.7 147 31.3
Hma1.2p1_0036F.1_g023670 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 8.0e-06 54.7 163 27.0
Medtr3g011100 Medicago truncatula HOM05D000007 ORTHO05D000017 8.0e-06 54.7 163 28.2
Medtr4g109270 Medicago truncatula HOM05D000007 ORTHO05D000017 8.0e-06 54.7 160 32.5
Nn8g40113 Nelumbo nucifera HOM05D000007 ORTHO05D000017 8.0e-06 54.7 168 27.4
PSO170G4766 Papaver somniferum HOM05D000007 ORTHO05D000676 8.0e-06 54.7 168 31.5
PSO675G2314 Papaver somniferum HOM05D000007 ORTHO05D000017 8.0e-06 54.7 127 31.5


User provided reference genes

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