Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.9e-206 722.2 350 100.0
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.0e-135 487.3 344 64.2
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.7e-127 459.9 343 61.5
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.0e-119 434.1 346 56.9
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.5e-118 429.5 330 59.1
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 1.6e-117 426.8 339 58.4
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 6.2e-117 424.9 340 57.4
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.1e-116 424.1 347 57.9
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 1.4e-116 423.7 347 57.6
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 3.1e-116 422.5 340 57.9
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 6.8e-116 421.4 319 59.9
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.2e-115 420.6 338 57.1
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 1.2e-115 420.6 345 55.4
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.5e-115 420.2 348 60.3
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.5e-115 420.2 342 56.4
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.5e-115 420.2 289 66.1
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 5.8e-115 418.3 320 60.0
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 9.8e-115 417.5 338 57.4
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.3e-114 417.2 342 55.6
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.7e-114 416.8 349 56.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 2.9e-114 416.0 348 58.0
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 3.7e-114 415.6 340 57.6
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 4.9e-114 415.2 341 58.1
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.9e-114 415.2 337 57.3
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 4.9e-114 415.2 339 56.0
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 6.4e-114 414.8 344 57.3
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.4e-114 414.8 330 58.8
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 8.3e-114 414.5 336 56.8
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.3e-114 414.5 336 56.8
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.1e-113 414.1 347 57.1
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 2.4e-113 412.9 320 59.4
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 7.0e-113 411.4 343 56.3
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.7e-112 409.5 336 56.2
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 4.6e-112 408.7 331 58.0
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 6.0e-112 408.3 340 55.6
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 6.0e-112 408.3 341 56.6
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.0e-111 407.5 339 56.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.3e-111 407.1 330 57.0
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.3e-111 407.1 341 54.3
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.3e-111 407.1 338 56.8
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.7e-111 406.8 333 55.6
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 2.3e-111 406.4 338 57.7
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.0e-111 406.0 329 56.5
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.9e-110 403.3 348 55.7
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.9e-110 403.3 339 55.8
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.9e-110 403.3 339 55.5
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.9e-110 403.3 330 57.3
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 3.3e-110 402.5 342 56.4
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 4.3e-110 402.1 340 55.0
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 5.6e-110 401.7 322 57.1
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 7.3e-110 401.4 304 61.2
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 9.5e-110 401.0 347 54.5
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.2e-109 400.6 329 55.9
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 2.1e-109 399.8 338 55.6
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.2e-109 398.3 339 54.9
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 8.1e-109 397.9 339 54.6
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.8e-108 396.7 334 56.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 6.8e-108 394.8 346 53.5
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 6.8e-108 394.8 349 52.7
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 8.9e-108 394.4 341 54.0
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.5e-107 393.7 345 54.2
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 2.6e-107 392.9 293 62.8
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 4.4e-107 392.1 333 53.5
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 4.4e-107 392.1 333 54.4
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 7.5e-107 391.3 303 60.4
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 9.9e-107 391.0 348 55.5
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.2e-106 389.8 296 62.8
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.2e-106 389.8 335 54.0
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 4.9e-106 388.7 300 60.0
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 8.3e-106 387.9 294 61.2
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 3.2e-105 386.0 295 61.7
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 3.2e-105 386.0 325 55.7
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.6e-104 383.6 279 60.9
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 3.5e-104 382.5 340 53.8
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 6.0e-104 381.7 327 55.4
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 1.7e-103 380.2 346 51.2
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.5e-99 367.1 326 51.5
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 2.0e-99 366.7 338 50.6
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 2.0e-99 366.7 299 57.5
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 5.8e-99 365.2 299 57.2
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 2.2e-98 363.2 343 49.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 2.4e-97 359.8 285 56.8
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 4.2e-97 359.0 343 50.7
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.2e-96 357.5 348 49.4
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.6e-96 357.1 284 57.7
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 4.6e-96 355.5 325 51.7
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 7.8e-96 354.8 355 49.3
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 5.1e-95 352.1 343 50.7
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.1e-94 350.9 282 56.4
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.5e-94 350.5 284 57.0
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 5.6e-94 348.6 286 55.2
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 5.6e-94 348.6 332 48.5
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 5.6e-94 348.6 333 49.8
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 5.6e-94 348.6 333 49.8
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 7.3e-94 348.2 332 48.5
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.7e-93 345.5 332 48.2
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 6.2e-93 345.1 291 53.6
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 5.3e-92 342.0 335 49.6
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.7e-90 337.0 296 52.4
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.5e-86 323.9 332 48.5
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.5e-86 323.9 309 51.8
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 5.3e-84 315.5 250 56.8
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.5e-83 313.9 266 57.9
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 7.6e-83 311.6 321 46.4
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.7e-80 303.1 328 44.8
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 8.7e-79 298.1 355 41.7
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 4.8e-77 292.4 286 47.2
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.2e-73 279.6 219 56.2
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 4.2e-73 279.3 335 43.0
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 9.3e-73 278.1 296 43.9
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 8.7e-71 271.6 293 44.4
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.1e-64 250.4 335 39.1
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-57 226.9 343 38.5
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.2e-56 224.6 296 39.9
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-55 219.5 316 39.2
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.5e-54 217.6 179 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-53 213.4 291 39.9
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-51 206.8 286 38.1
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.5e-49 199.1 317 36.6
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 9.4e-49 198.4 282 35.1
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.1e-48 195.7 295 37.6
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-47 194.9 280 38.9
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-47 193.0 303 37.6
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-47 193.0 309 37.2
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.7e-46 188.3 294 37.4
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-45 186.8 305 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-44 184.9 335 31.9
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-44 184.1 304 37.5
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.1e-44 181.8 153 54.9
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.5e-43 179.5 284 34.9
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.7e-42 177.6 294 33.0
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.7e-40 169.5 291 33.3
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 243 38.7
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.7e-39 165.6 291 33.0
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.4e-38 162.2 291 33.3
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.8e-37 159.5 321 33.6
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.7e-32 142.9 270 31.5
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.2e-22 111.7 277 28.2
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-15 88.6 66 54.5
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.8e-15 87.8 162 34.6
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.0e-10 72.0 74 39.2
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.0e-10 72.0 90 42.2
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 8.6e-10 68.9 40 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 1.6e-08 64.7 129 31.0


User provided reference genes

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