Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 7.1e-36 153.3 72 100.0
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 1.3e-18 95.9 68 69.1
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.3e-18 95.9 68 69.1
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.3e-18 95.9 68 69.1
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.3e-18 95.9 68 69.1
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 1.8e-18 95.5 67 68.7
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.3e-18 95.1 67 68.7
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 3.0e-18 94.7 70 70.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 3.0e-18 94.7 68 67.6
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 3.9e-18 94.4 67 65.7
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 3.9e-18 94.4 67 70.1
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 6.7e-18 93.6 67 70.1
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 6.7e-18 93.6 67 70.1
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 6.7e-18 93.6 66 69.7
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.1e-17 92.8 67 68.7
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.1e-17 92.8 69 68.1
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.5e-17 92.4 67 67.2
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.5e-17 92.4 62 72.6
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.5e-17 92.4 67 67.2
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.9e-17 92.0 67 67.2
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 2.5e-17 91.7 67 64.2
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.5e-17 91.7 67 67.2
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.5e-17 91.7 67 68.7
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.3e-17 91.3 67 67.2
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 4.3e-17 90.9 70 70.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 5.7e-17 90.5 72 65.3
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 5.7e-17 90.5 70 62.9
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.7e-17 90.5 67 62.7
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 7.4e-17 90.1 65 70.8
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 7.4e-17 90.1 67 65.7
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 7.4e-17 90.1 69 66.7
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 9.7e-17 89.7 70 65.7
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.3e-16 89.4 62 69.4
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.3e-16 89.4 66 65.2
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.6e-16 89.0 66 68.2
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.6e-16 89.0 66 66.7
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.6e-16 89.0 67 67.2
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.2e-16 88.6 66 69.7
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 2.2e-16 88.6 73 65.8
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.2e-16 88.6 66 69.7
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 3.7e-16 87.8 70 65.7
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.8e-16 87.4 70 65.7
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.8e-16 87.4 70 65.7
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 4.8e-16 87.4 70 64.3
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 6.3e-16 87.0 66 69.7
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.1e-15 86.3 61 68.9
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.1e-15 86.3 74 62.2
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 1.4e-15 85.9 69 63.8
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.4e-15 85.9 66 65.2
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.4e-15 85.9 66 66.7
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.4e-15 85.9 66 66.7
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.4e-15 85.9 63 66.7
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.8e-15 85.5 67 62.7
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.8e-15 85.5 70 62.9
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.8e-15 85.5 66 66.7
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.8e-15 85.5 64 67.2
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 2.4e-15 85.1 64 67.2
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 3.1e-15 84.7 54 74.1
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 3.1e-15 84.7 65 64.6
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.1e-15 84.3 62 67.7
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.1e-15 84.3 62 67.7
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 4.1e-15 84.3 73 61.6
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 4.1e-15 84.3 66 65.2
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 5.3e-15 84.0 67 61.2
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 5.3e-15 84.0 67 62.7
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 6.9e-15 83.6 69 56.5
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 6.9e-15 83.6 71 60.6
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 6.9e-15 83.6 64 65.6
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 6.9e-15 83.6 67 62.7
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 9.0e-15 83.2 65 63.1
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 9.0e-15 83.2 65 63.1
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 1.2e-14 82.8 66 62.1
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 1.5e-14 82.4 64 64.1
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.5e-14 82.4 61 65.6
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.5e-14 82.4 70 60.0
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 2.0e-14 82.0 62 59.7
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.6e-14 81.6 64 65.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 2.6e-14 81.6 61 67.2
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 2.6e-14 81.6 67 61.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 3.4e-14 81.3 69 60.9
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 4.5e-14 80.9 65 61.5
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.5e-14 80.9 64 64.1
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 4.5e-14 80.9 70 58.6
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 7.7e-14 80.1 66 59.1
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 7.7e-14 80.1 62 66.1
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 1.0e-13 79.7 65 60.0
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.0e-13 79.7 69 56.5
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.0e-13 79.7 59 66.1
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.3e-13 79.3 67 58.2
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.3e-13 79.3 62 64.5
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.3e-13 79.3 64 62.5
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 2.2e-13 78.6 66 57.6
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.2e-13 78.6 62 64.5
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.2e-13 78.6 62 64.5
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.2e-13 78.6 62 64.5
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.9e-13 78.2 60 63.3
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 3.8e-13 77.8 65 60.0
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 3.8e-13 77.8 61 62.3
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 3.8e-13 77.8 61 62.3
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.8e-13 77.8 60 68.3
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.0e-13 77.4 67 59.7
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.5e-13 77.0 55 70.9
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.5e-13 77.0 55 70.9
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 6.5e-13 77.0 67 59.7
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 6.5e-13 77.0 55 70.9
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 8.5e-13 76.6 61 62.3
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.5e-13 76.6 65 58.5
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.4e-12 75.9 60 65.0
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.9e-12 75.5 60 65.0
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 2.5e-12 75.1 62 56.5
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.2e-12 74.7 65 58.5
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.2e-12 74.3 62 59.7
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 7.2e-12 73.6 65 58.5
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 7.2e-12 73.6 62 53.2
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.6e-11 72.4 63 57.1
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 2.1e-11 72.0 62 54.8
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 4.6e-11 70.9 59 54.2
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.0e-10 69.7 62 54.8
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 3.9e-10 67.8 60 53.3
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 6.7e-10 67.0 35 82.9
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 8.8e-10 66.6 48 64.6
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 2.0e-09 65.5 41 73.2
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 4.3e-09 64.3 60 50.0
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.7e-08 62.4 58 53.4
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 4.8e-08 60.8 54 55.6
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 6.3e-08 60.5 67 47.8
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.4e-07 59.3 60 48.3
SMO290G0006 Selaginella moellendorffii HOM05D002570 ORTHO05D002689 5.3e-07 57.4 65 47.7
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.7e-06 53.5 41 61.0


User provided reference genes

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