Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 0.0e+00 1455.3 687 100.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 7.4e-292 1006.9 574 79.6
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.7e-291 1005.7 605 74.9
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 6.3e-291 1003.8 588 77.0
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 9.1e-290 1000.0 599 76.5
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 1.7e-288 995.7 594 76.3
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.7e-288 995.7 591 77.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 5.0e-288 994.2 603 76.9
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 5.0e-288 994.2 596 76.7
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.5e-287 992.6 574 78.7
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.5e-287 992.6 606 75.7
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 3.2e-287 991.5 596 75.8
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 1.6e-286 989.2 594 76.1
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.1e-286 988.8 606 75.1
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 3.6e-286 988.0 589 76.2
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 4.7e-286 987.6 618 73.5
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.4e-285 986.1 572 78.3
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.4e-285 986.1 592 75.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.3e-285 985.3 594 77.3
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 4.0e-285 984.6 599 75.5
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 5.2e-285 984.2 587 76.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.8e-285 983.8 572 78.3
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 6.8e-285 983.8 577 76.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 1.5e-284 982.6 594 76.9
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.5e-284 982.6 592 76.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 4.4e-284 981.1 591 76.5
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 2.2e-283 978.8 567 78.0
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 6.3e-283 977.2 572 77.4
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 8.3e-283 976.9 590 74.7
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 8.3e-283 976.9 591 76.3
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.4e-282 976.1 572 76.7
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 2.4e-282 975.3 596 75.0
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 4.1e-282 974.5 570 76.7
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 5.3e-282 974.2 592 75.5
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 7.0e-282 973.8 588 75.9
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 7.0e-282 973.8 593 75.2
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 9.1e-282 973.4 591 75.6
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.2e-281 973.0 591 75.0
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.2e-281 973.0 599 74.8
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.6e-281 972.6 602 75.4
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.0e-281 972.2 588 75.7
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 2.0e-281 972.2 605 75.4
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.7e-281 971.8 597 74.7
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.0e-280 969.9 602 74.8
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 1.0e-280 969.9 592 75.5
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.3e-280 969.5 601 73.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.3e-280 969.5 574 75.8
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 1.1e-279 966.5 594 75.3
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.1e-279 966.5 571 77.2
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.5e-279 966.1 589 75.7
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 7.2e-279 963.8 572 76.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 1.6e-278 962.6 567 75.8
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.8e-277 959.1 594 75.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 2.3e-277 958.7 605 72.4
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 6.8e-277 957.2 589 73.9
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 2.0e-276 955.7 572 75.3
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.4e-276 954.9 567 75.5
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 2.2e-275 952.2 614 71.3
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 4.8e-275 951.0 567 75.3
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 4.8e-275 951.0 610 71.6
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 6.3e-275 950.7 567 75.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 8.3e-275 950.3 568 75.4
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.4e-274 948.7 568 75.2
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.4e-274 948.7 568 75.2
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 7.0e-274 947.2 602 71.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 9.1e-274 946.8 602 71.8
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 9.1e-274 946.8 600 72.3
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.2e-273 946.4 603 71.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 4.5e-273 944.5 567 75.0
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 5.0e-272 941.0 567 74.8
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.1e-271 939.9 606 71.8
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.9e-271 939.1 601 71.4
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 5.5e-271 937.6 558 75.1
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 3.6e-270 934.9 572 73.1
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.7e-267 926.0 579 73.6
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.7e-267 926.0 738 61.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.0e-266 920.6 681 65.5
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.7e-265 918.7 560 75.5
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.1e-262 909.1 643 68.1
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 2.1e-262 909.1 610 67.2
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 8.0e-262 907.1 806 56.1
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 2.0e-257 892.5 565 72.0
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 8.6e-256 887.1 537 77.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 3.1e-253 878.6 550 73.5
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.5e-252 876.3 534 75.5
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 7.5e-252 874.0 537 75.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.8e-252 873.6 609 68.3
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.3e-251 873.2 609 68.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 7.1e-250 867.5 549 72.1
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 9.2e-250 867.1 520 76.3
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.3e-248 862.4 591 69.0
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 3.9e-248 861.7 552 72.6
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 5.2e-245 851.3 579 69.9
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.2e-238 830.1 512 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.2e-235 819.3 570 64.7
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 7.1e-234 814.3 595 67.1
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.1e-233 812.8 604 65.2
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.7e-232 809.7 572 64.3
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.4e-228 795.0 614 63.5
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 1.7e-227 793.1 535 69.2
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.5e-220 770.0 599 60.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.1e-218 763.8 596 62.9
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.3e-215 752.3 593 58.5
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 2.5e-210 736.1 492 68.3
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.4e-202 710.3 411 78.6
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.6e-201 706.8 523 63.3
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 3.0e-200 702.6 421 75.8
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.5e-196 690.3 460 70.7
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 3.0e-168 596.3 418 67.7
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 6.5e-163 578.6 351 74.9
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 5.0e-147 525.8 345 70.1
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.0e-115 421.8 464 48.3
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 3.0e-115 420.2 265 75.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.0e-103 380.9 209 80.4
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 4.3e-74 283.5 141 87.9
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 5.9e-71 273.1 260 55.0
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.9e-68 262.7 151 76.2
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 4.1e-64 250.4 153 73.9
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.7e-58 229.2 160 62.5
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.7e-55 221.1 341 37.0
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 1.2e-52 212.2 130 72.3
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 1.2e-47 195.7 126 66.7
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 3.6e-44 184.1 105 80.0
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.4e-40 172.2 83 90.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 5.9e-39 166.8 85 88.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.2e-36 159.1 103 74.8
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.6e-34 151.4 121 57.0
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 6.2e-28 130.2 208 35.6
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.2e-26 125.9 72 79.2
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.9e-24 118.6 82 69.5
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-23 115.9 111 53.2
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.5e-23 114.4 227 30.4
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 3.0e-22 111.3 205 30.7
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 3.6e-20 104.4 51 84.3
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 6.2e-20 103.6 138 43.5
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 6.8e-19 100.1 205 26.8
Sopen06g022330 Solanum pennellii HOM05D001762 ORTHO05D001774 1.3e-17 95.9 227 29.1
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.7e-17 95.5 74 60.8
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.1e-16 92.8 56 73.2
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.9e-16 92.0 42 90.5
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.4e-16 91.7 56 71.4
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.4e-16 91.7 56 73.2
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.4e-16 91.7 56 71.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.7e-15 88.2 41 85.4
GSVIVG01016784001 Vitis vinifera HOM05D001762 ORTHO05D001774 1.0e-14 86.3 229 27.5
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 1.3e-14 85.9 69 60.9
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.3e-13 80.9 42 81.0
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.3e-13 80.9 42 81.0
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.6e-12 77.8 51 68.6
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.6e-12 77.8 51 68.6
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 6.8e-11 73.6 34 82.4
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 3.4e-10 71.2 42 76.2
Hund08711 Selenicereus undatus HOM05D001762 ORTHO05D001774 1.6e-07 62.4 109 31.2
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.7e-07 61.6 256 23.0
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.5e-07 61.2 256 23.0


User provided reference genes

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