Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.2e-266 921.8 481 100.0
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 9.8e-174 614.0 493 66.9
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.3e-161 572.0 498 62.4
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.1e-159 565.8 495 61.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.8e-157 558.9 492 61.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.1e-156 554.7 487 58.7
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.2e-155 553.9 488 60.7
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.3e-154 550.4 460 63.9
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 3.0e-154 549.3 490 59.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 5.6e-153 545.0 495 59.2
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 3.6e-152 542.3 490 58.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 8.1e-152 541.2 489 59.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 8.1e-152 541.2 489 59.5
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.4e-151 540.4 492 58.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.4e-151 540.4 491 57.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.8e-151 540.0 498 60.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.8e-151 540.0 460 62.6
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.8e-151 540.0 500 58.4
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.8e-151 540.0 486 59.1
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.2e-150 537.3 490 58.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.4e-150 535.8 483 59.2
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.8e-149 532.3 505 57.6
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.9e-149 531.9 497 57.7
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.4e-148 530.4 487 57.9
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 7.1e-148 528.1 491 57.0
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.6e-147 526.9 489 59.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.1e-147 526.6 494 56.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.7e-147 526.2 498 57.2
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.5e-147 525.8 452 63.1
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.7e-146 523.5 493 56.6
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-146 523.5 490 57.3
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.7e-146 523.5 492 56.9
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.1e-144 516.5 490 56.5
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.6e-144 515.8 482 57.1
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 6.2e-144 515.0 490 56.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.4e-143 513.1 487 55.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 3.1e-143 512.7 483 56.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-143 512.7 476 57.6
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.3e-143 511.9 513 55.0
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 5.3e-143 511.9 457 59.7
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 9.0e-143 511.1 499 57.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.5e-142 510.4 490 55.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 7.6e-142 508.1 490 55.9
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-141 506.9 521 53.9
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.9e-141 506.1 499 56.7
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.1e-140 504.2 500 55.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-140 503.8 468 57.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.9e-140 503.4 491 57.2
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 2.4e-140 503.1 491 55.4
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 5.4e-140 501.9 495 56.4
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.1e-139 500.0 486 55.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.7e-139 499.6 486 54.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.5e-139 499.2 511 54.4
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 7.9e-139 498.0 500 55.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.0e-138 497.7 496 56.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.3e-138 497.3 419 62.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 3.9e-138 495.7 494 56.7
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 5.1e-138 495.4 486 54.5
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.1e-137 494.2 488 53.9
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.5e-137 493.0 486 54.1
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.3e-137 492.7 497 56.1
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 7.4e-137 491.5 491 55.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 9.6e-137 491.1 481 57.0
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.1e-135 487.6 488 52.9
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.4e-135 487.3 491 53.0
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.1e-135 486.1 494 53.8
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.0e-135 485.7 490 54.5
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 4.0e-135 485.7 492 56.1
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.9e-135 485.0 494 54.5
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.9e-135 485.0 496 54.0
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.8e-134 481.9 488 52.7
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.7e-133 480.3 502 53.8
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 4.9e-133 478.8 495 54.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 6.5e-133 478.4 494 53.8
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.4e-132 477.2 436 61.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.5e-132 476.5 489 53.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.6e-131 473.8 489 54.2
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.7e-131 473.0 447 56.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.3e-130 470.7 488 53.3
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.0e-130 469.5 488 52.3
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.1e-129 467.6 493 52.3
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.9e-129 466.8 492 53.7
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.5e-129 466.5 490 53.3
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.3e-129 466.1 495 54.1
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 3.3e-129 466.1 499 51.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.3e-129 466.1 499 52.3
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.8e-128 463.0 447 54.4
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 3.7e-128 462.6 406 59.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.8e-128 462.2 451 55.4
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.4e-127 460.7 448 56.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.8e-127 460.3 487 52.4
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 3.1e-127 459.5 478 52.7
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 7.6e-126 454.9 440 55.5
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.2e-125 453.4 486 50.6
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 6.5e-125 451.8 486 50.8
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 6.5e-125 451.8 482 52.1
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.1e-124 451.1 513 50.5
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-124 449.9 486 51.9
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.2e-124 449.5 486 51.0
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.5e-124 448.7 488 49.2
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 5.5e-124 448.7 499 52.3
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.5e-123 446.0 508 51.2
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 6.1e-123 445.3 486 50.6
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 6.1e-123 445.3 489 50.7
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 7.9e-123 444.9 489 51.1
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.0e-122 444.5 519 49.3
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 6.7e-122 441.8 488 50.8
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 6.7e-122 441.8 484 50.4
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-120 437.6 456 53.5
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.2e-120 434.9 538 48.0
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-119 434.5 538 48.0
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.4e-119 434.1 443 53.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.0e-118 430.3 489 49.9
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 4.5e-118 429.1 487 49.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.5e-118 429.1 589 43.8
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 7.7e-118 428.3 546 46.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.8e-117 426.0 387 57.4
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.5e-117 424.9 452 52.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 8.5e-117 424.9 486 47.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.6e-115 420.6 482 49.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 4.3e-113 412.5 467 49.7
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.7e-113 412.1 488 47.3
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.7e-112 410.6 486 48.6
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 3.7e-112 409.5 473 48.8
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-111 407.5 491 48.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 6.9e-111 405.2 412 53.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.2e-110 404.4 448 50.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-101 374.0 486 46.5
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.7e-96 356.3 486 44.9
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.7e-96 356.3 412 52.4
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.6e-94 350.1 500 43.4
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-93 347.4 454 48.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.9e-93 346.7 395 51.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.5e-89 334.3 448 45.3
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 4.1e-87 326.2 216 69.9
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.5e-85 318.9 489 43.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.5e-84 317.8 458 40.8
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.6e-83 313.2 430 45.3
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 3.0e-82 310.1 216 66.2
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.0e-81 307.4 370 45.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.8e-81 305.1 357 48.2
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 9.1e-79 298.5 222 62.6
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.0e-78 297.4 351 50.1
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.7e-78 297.0 357 47.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 2.8e-75 287.0 499 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.9e-72 276.2 303 47.9
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.0e-61 241.9 176 63.1
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 9.9e-49 198.7 135 71.1
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.1e-46 191.0 159 59.1
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.1e-46 191.0 217 53.0
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.7e-45 188.0 319 43.3
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 7.3e-44 182.6 247 40.5
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 5.6e-36 156.4 231 35.1
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.5e-33 148.3 272 39.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.6e-30 136.7 192 37.5
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 2.3e-29 134.4 225 38.2
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.3e-28 130.6 95 63.2
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 4.5e-25 120.2 76 72.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.6e-19 101.7 114 53.5
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.9e-18 96.3 122 49.2
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.9e-18 96.3 68 64.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 3.0e-13 80.9 52 71.2
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.8e-11 73.6 94 46.8
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.7e-08 65.1 43 69.8
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.7e-06 57.8 54 51.9


User provided reference genes

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