Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.7e-177 625.9 331 100.0
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.7e-116 423.3 331 63.7
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.6e-114 416.8 336 63.4
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.5e-114 415.6 332 63.9
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.3e-113 413.7 330 62.7
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.8e-113 413.3 330 64.5
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.7e-113 411.4 332 63.9
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 8.7e-113 411.0 329 63.8
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.1e-112 410.6 330 61.2
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.9e-112 409.8 329 62.3
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 3.3e-112 409.1 331 61.3
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.3e-112 409.1 330 60.6
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 5.6e-112 408.3 330 62.1
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 9.6e-112 407.5 326 63.2
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.8e-111 406.0 331 61.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 2.8e-111 406.0 331 61.0
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.7e-111 405.6 330 63.6
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 4.8e-111 405.2 331 62.8
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 6.2e-111 404.8 331 62.8
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 6.2e-111 404.8 333 61.6
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.1e-110 404.1 331 60.7
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.1e-110 404.1 332 61.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.4e-110 403.7 330 61.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.8e-110 403.3 315 65.4
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.8e-110 403.3 329 60.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.0e-110 402.1 327 61.8
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 5.3e-110 401.7 329 63.2
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 6.9e-110 401.4 330 61.5
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.0e-109 399.8 329 61.7
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 4.5e-109 398.7 332 62.0
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 4.5e-109 398.7 326 62.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 5.8e-109 398.3 326 60.4
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 7.6e-109 397.9 333 58.9
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.7e-108 396.7 333 61.6
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 1.7e-108 396.7 327 61.2
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.7e-108 396.7 326 60.7
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.2e-108 396.4 331 61.6
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 3.8e-108 395.6 327 62.1
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 6.5e-108 394.8 326 62.9
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 8.4e-108 394.4 333 61.3
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 8.4e-108 394.4 325 61.2
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.1e-107 394.0 319 61.4
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.9e-107 393.3 326 62.0
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 5.5e-107 391.7 332 59.6
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.1e-106 389.8 327 57.8
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 4.6e-106 388.7 320 61.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 4.6e-106 388.7 331 58.6
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 7.9e-106 387.9 326 59.2
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.3e-105 387.1 322 59.3
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.3e-105 387.1 326 60.7
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.8e-105 386.7 327 61.5
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.8e-105 386.7 333 60.7
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.3e-105 386.3 328 60.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 2.3e-105 386.3 331 58.0
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 3.0e-105 386.0 326 58.0
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 3.0e-105 386.0 331 57.7
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 6.7e-105 384.8 333 58.9
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 8.7e-105 384.4 327 58.7
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.9e-104 383.3 326 59.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 7.4e-104 381.3 329 59.9
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 9.6e-104 380.9 326 57.4
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.6e-103 380.2 327 59.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.1e-103 379.8 326 59.2
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 2.1e-103 379.8 339 57.8
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.8e-103 379.4 330 56.7
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.1e-102 377.5 328 56.7
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.4e-102 376.3 330 57.9
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 3.1e-102 375.9 329 59.0
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 6.9e-102 374.8 358 55.3
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.5e-101 373.6 328 58.2
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 2.0e-101 373.2 332 56.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 7.6e-101 371.3 327 58.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 7.6e-101 371.3 335 59.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.3e-100 370.5 326 58.0
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 3.8e-100 369.0 322 59.0
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.8e-100 369.0 330 56.4
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.5e-99 366.3 331 56.5
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 7.2e-99 364.8 333 58.0
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.6e-98 363.6 332 54.8
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 2.1e-98 363.2 328 56.7
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 4.6e-98 362.1 326 55.5
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 6.1e-98 361.7 331 55.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 7.9e-98 361.3 333 55.3
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.0e-97 360.9 373 54.7
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.3e-97 360.5 327 55.4
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 3.0e-97 359.4 331 55.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.0e-97 359.4 331 54.7
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 5.1e-97 358.6 329 54.4
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 8.7e-97 357.8 329 54.7
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 1.5e-96 357.1 332 54.2
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 3.3e-96 355.9 329 58.1
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.8e-95 352.8 326 56.1
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 8.2e-95 351.3 329 54.7
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.5e-93 347.1 331 54.1
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 6.5e-92 341.7 326 52.8
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.5e-91 339.7 296 58.1
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.0e-89 332.8 324 52.5
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 8.8e-89 331.3 328 50.6
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.5e-88 330.5 324 51.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-84 317.4 297 54.9
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.3e-84 317.4 321 53.0
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 5.5e-83 312.0 296 54.1
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.4e-81 307.4 351 46.7
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 7.4e-80 301.6 243 60.1
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.1e-78 297.7 254 61.4
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.7e-77 291.6 260 58.1
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.0e-73 281.2 299 51.2
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 9.1e-70 268.1 337 46.0
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.9e-67 260.4 251 55.8
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.0e-64 250.4 178 66.9
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 4.1e-62 242.7 205 59.5
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.4e-57 227.6 252 52.0
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 4.1e-54 216.1 237 46.8
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 5.9e-53 212.2 205 51.7
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 2.1e-42 177.2 177 51.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 8.0e-42 175.3 310 37.1
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.4e-39 165.6 253 42.7
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-35 154.8 162 47.5
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.2e-33 146.0 203 46.8
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.4e-32 142.9 308 33.4
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 7.8e-29 132.1 112 54.5
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 2.3e-28 130.6 122 55.7
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 5.6e-27 125.9 175 44.6
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 2.3e-25 120.6 121 55.4
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.7e-21 107.1 80 63.8
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.3e-20 104.8 168 41.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 3.9e-20 103.2 120 51.7
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.9e-19 100.9 73 67.1
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.3e-19 99.8 168 36.9
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 1.8e-17 94.4 65 67.7
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 2.2e-15 87.4 81 56.8
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.9e-15 87.0 62 69.4
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 6.4e-15 85.9 111 45.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 8.4e-15 85.5 133 39.1
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-14 84.3 89 49.4
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 2.1e-13 80.9 68 55.9
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.5e-13 80.1 92 54.3
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 6.6e-12 75.9 60 65.0
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.5e-11 74.7 83 49.4


User provided reference genes

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