Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 5.0e-185 651.0 334 100.0
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.6e-146 523.1 328 82.3
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 3.5e-146 521.9 328 81.7
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.3e-145 520.0 328 81.7
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.3e-145 520.0 333 81.1
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 3.9e-145 518.5 330 80.9
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.1e-145 518.1 333 81.1
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.5e-144 516.5 328 81.1
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 2.5e-144 515.8 328 81.1
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 5.6e-144 514.6 328 80.5
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 5.6e-144 514.6 332 80.7
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 5.6e-144 514.6 332 80.7
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 7.4e-144 514.2 328 81.7
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 7.4e-144 514.2 328 80.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.3e-143 513.5 328 80.5
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.6e-143 513.1 328 82.0
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.1e-143 512.7 328 80.2
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 4.8e-143 511.5 332 78.0
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.2e-143 511.1 328 80.2
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.2e-143 511.1 328 80.2
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 6.2e-143 511.1 332 78.0
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 6.2e-143 511.1 325 80.6
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 8.1e-143 510.8 328 80.2
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 8.1e-143 510.8 328 80.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.4e-142 510.0 328 79.9
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.4e-142 510.0 327 80.4
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.8e-142 509.6 328 79.9
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 3.1e-142 508.8 332 77.7
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 4.0e-142 508.4 327 79.2
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 4.0e-142 508.4 330 78.5
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 5.3e-142 508.1 330 78.2
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 6.9e-142 507.7 328 79.6
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.0e-142 507.3 328 79.6
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 9.0e-142 507.3 328 79.3
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.2e-141 506.9 330 78.8
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.2e-141 506.9 328 78.0
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.0e-141 506.1 325 79.7
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.0e-141 506.1 328 79.3
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 2.6e-141 505.8 328 77.7
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 2.6e-141 505.8 328 77.7
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 2.6e-141 505.8 328 77.7
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 2.6e-141 505.8 328 77.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.6e-141 505.8 330 79.1
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.6e-141 505.8 327 80.4
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 3.4e-141 505.4 327 79.2
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.4e-141 505.4 328 78.4
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.4e-141 505.4 328 77.7
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 3.4e-141 505.4 328 78.7
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 7.6e-141 504.2 328 78.7
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.0e-140 503.8 328 78.4
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.0e-140 503.8 328 78.7
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.3e-140 503.4 328 78.7
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.3e-140 503.4 328 78.7
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.3e-140 503.4 330 77.6
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 1.3e-140 503.4 328 78.4
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.7e-140 503.1 328 78.4
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 2.2e-140 502.7 328 78.4
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 2.2e-140 502.7 328 77.4
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 2.2e-140 502.7 328 78.4
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.9e-140 502.3 325 80.0
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.8e-140 501.9 331 77.6
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 6.5e-140 501.1 330 78.2
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 6.5e-140 501.1 332 76.8
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.5e-140 501.1 327 79.2
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 8.4e-140 500.7 328 76.8
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 8.4e-140 500.7 329 78.1
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 8.4e-140 500.7 328 77.7
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.4e-139 500.0 328 77.4
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 1.9e-139 499.6 328 76.8
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.5e-139 499.2 328 76.8
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.5e-139 498.0 328 78.4
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 5.5e-139 498.0 328 79.6
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 5.5e-139 498.0 325 78.5
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 9.3e-139 497.3 328 77.7
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 9.3e-139 497.3 328 77.7
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.2e-138 496.9 330 77.3
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 1.6e-138 496.5 328 76.2
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.7e-138 495.7 334 76.9
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.7e-138 495.7 327 78.3
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 6.0e-138 494.6 328 77.1
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.9e-138 494.2 329 77.5
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 7.9e-138 494.2 355 73.0
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 3.0e-137 492.3 370 72.2
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 3.0e-137 492.3 328 76.5
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 6.7e-137 491.1 327 78.0
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 6.7e-137 491.1 328 77.1
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.9e-136 489.6 326 75.8
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.6e-135 486.5 382 69.9
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.8e-135 485.7 328 75.3
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 3.7e-135 485.3 328 77.7
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 3.7e-135 485.3 325 76.6
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.3e-135 484.6 328 76.8
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.1e-134 483.8 329 75.1
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-134 483.4 308 81.2
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.8e-134 483.0 327 77.1
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 3.1e-134 482.3 325 75.4
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.1e-134 481.9 327 76.5
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 5.3e-134 481.5 316 76.9
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.9e-132 475.7 329 75.4
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 5.1e-129 464.9 452 58.6
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 8.7e-129 464.2 287 81.5
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.1e-128 463.8 331 74.6
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 2.5e-128 462.6 325 72.9
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 5.7e-128 461.5 329 72.0
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 4.5e-125 451.8 281 83.3
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 7.2e-123 444.5 328 73.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.3e-119 431.4 373 65.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 8.2e-119 431.0 328 70.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.8e-118 429.9 299 75.6
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 6.9e-118 427.9 329 70.2
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.0e-116 424.1 327 69.4
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.7e-112 408.3 325 61.2
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 6.3e-111 404.8 324 64.8
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 8.2e-111 404.4 333 67.9
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 5.9e-109 398.3 322 63.4
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.5e-104 383.6 324 64.2
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 2.0e-96 356.7 232 78.0
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.3e-95 354.0 231 77.9
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 5.0e-92 342.0 275 66.2
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.2e-91 338.2 316 59.5
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.4e-89 334.0 238 71.8
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.4e-81 307.4 327 57.2
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.0e-80 303.5 195 80.5
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 4.4e-80 302.4 229 69.4
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 7.8e-77 291.6 217 72.4
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 5.0e-76 288.9 217 72.4
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 6.6e-76 288.5 334 53.0
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 6.6e-76 288.5 335 45.7
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.2e-72 277.7 165 83.6
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 7.5e-72 275.0 217 70.0
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.0e-60 236.5 268 53.0
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 5.1e-60 235.7 163 74.8
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 6.6e-60 235.3 163 76.7
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 8.4e-55 218.4 328 43.9
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-53 213.8 134 81.3
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 4.0e-49 199.5 133 78.2
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.4e-38 162.5 102 79.4
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 1.9e-35 154.1 170 55.3
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 4.3e-35 152.9 153 54.9
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.2e-32 144.8 163 52.1
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 3.8e-31 139.8 89 78.7
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 4.9e-31 139.4 112 66.1
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 5.5e-30 136.0 90 78.9
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.8e-28 131.0 69 88.4
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.6e-26 124.4 89 73.0
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 2.1e-26 124.0 88 68.2
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 4.0e-25 119.8 72 80.6
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 5.3e-25 119.4 80 77.5
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.9e-23 112.8 65 83.1
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 1.4e-22 111.3 80 67.5
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 3.2e-22 110.2 72 73.6
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.6e-21 106.3 69 78.3
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 3.9e-20 103.2 72 73.6
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 6.5e-15 85.9 65 70.8
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-13 80.9 61 72.1
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.6e-08 63.9 41 75.6
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 4.5e-08 63.2 33 87.9
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 7.2e-06 55.8 85 42.4


User provided reference genes

Program Settings