Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 0.0e+00 2307.3 1173 100.0
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 0.0e+00 1517.7 1173 65.6
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 0.0e+00 1488.8 1165 65.8
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1468.4 1164 63.6
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1450.6 1164 63.2
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1439.9 1168 63.4
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1429.8 1173 62.9
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1413.7 1166 62.5
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1409.8 1166 62.3
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1404.0 1170 61.6
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1401.7 1175 61.6
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1400.2 1166 61.3
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 0.0e+00 1398.6 1175 61.4
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1395.6 1171 61.0
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 0.0e+00 1393.3 1161 61.6
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1374.4 1173 60.8
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 0.0e+00 1370.1 1169 61.1
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1368.6 1175 60.1
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1364.7 1169 60.4
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 0.0e+00 1361.7 1177 60.8
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1358.2 1177 60.6
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 0.0e+00 1357.4 1175 60.0
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 0.0e+00 1357.0 1166 59.6
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 0.0e+00 1355.9 1157 60.1
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 0.0e+00 1355.1 1165 59.7
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 1351.3 1165 59.6
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1350.5 1177 60.7
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 0.0e+00 1349.7 1165 59.5
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 1346.3 1165 59.5
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1345.9 1165 59.2
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 0.0e+00 1345.9 1165 59.9
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1345.1 1167 59.3
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1343.2 1208 59.2
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1342.8 1197 59.4
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 0.0e+00 1342.0 1166 57.6
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 0.0e+00 1341.3 1165 59.5
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1338.9 1176 58.1
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 0.0e+00 1338.9 1174 58.5
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 0.0e+00 1338.2 1178 58.9
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 0.0e+00 1337.0 1158 60.6
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1333.5 1167 58.3
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 0.0e+00 1333.2 1168 58.0
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 0.0e+00 1331.6 1169 57.5
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 0.0e+00 1330.5 1217 57.8
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 0.0e+00 1329.7 1158 58.2
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 0.0e+00 1328.9 1186 57.9
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 0.0e+00 1324.7 1166 59.3
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 0.0e+00 1321.2 1181 58.1
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 0.0e+00 1320.8 1175 58.6
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1318.1 1108 60.6
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1316.2 1167 57.8
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1315.4 1173 58.8
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1314.7 1175 59.1
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 0.0e+00 1314.7 1165 58.1
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 0.0e+00 1313.5 1167 58.7
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1312.0 1176 57.9
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1311.6 1172 57.4
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 0.0e+00 1310.4 1167 57.5
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 0.0e+00 1305.0 1269 55.6
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 0.0e+00 1304.3 1052 62.9
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 0.0e+00 1300.8 1169 58.9
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 0.0e+00 1298.1 1167 57.9
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 0.0e+00 1294.6 1166 57.5
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 0.0e+00 1293.1 1226 54.8
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1291.6 1152 58.9
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1287.7 1174 57.5
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1284.6 1111 60.4
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 0.0e+00 1281.9 1177 56.2
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1278.5 1223 56.7
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 0.0e+00 1273.1 1158 56.9
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 0.0e+00 1272.3 1178 56.1
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 0.0e+00 1261.9 1170 55.4
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 0.0e+00 1255.4 1123 57.0
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 0.0e+00 1251.5 1170 55.4
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 0.0e+00 1241.5 1113 57.1
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 0.0e+00 1240.7 1081 58.5
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 0.0e+00 1239.9 1164 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 0.0e+00 1237.2 1124 57.2
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1234.9 1116 58.7
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1234.2 1173 55.9
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1224.2 1176 55.9
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1222.6 1075 58.6
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1203.3 1164 55.9
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1165.2 1178 53.2
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1121.3 1017 56.6
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 4.1e-306 1055.0 928 58.5
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.4e-303 1046.6 1178 49.2
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 2.0e-297 1026.2 866 60.9
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 3.1e-282 975.7 1199 45.6
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 3.5e-265 919.1 796 60.6
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 2.5e-255 886.3 831 56.1
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 2.5e-255 886.3 784 58.9
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 1.5e-239 833.9 704 61.2
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 3.3e-231 806.2 1219 40.8
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 3.8e-219 766.1 641 61.6
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 2.7e-217 760.0 824 49.0
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.0e-216 758.1 718 56.5
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 9.6e-207 724.9 1141 39.4
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 7.4e-191 672.2 809 47.6
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 7.4e-191 672.2 809 47.6
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 5.3e-173 612.8 468 65.2
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.8e-161 573.9 433 65.6
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 7.3e-154 549.3 537 53.4
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 3.6e-153 547.0 442 60.9
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.0e-152 545.4 448 62.5
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.9e-139 500.4 483 55.9
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.8e-135 486.5 518 52.1
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 2.4e-128 464.5 458 53.9
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.2e-126 458.0 467 52.5
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 6.6e-115 419.9 592 42.4
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 8.1e-113 412.9 412 53.4
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 3.4e-111 407.5 334 61.4
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 5.1e-107 393.7 333 58.9
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.2e-97 359.8 333 58.0
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 2.4e-96 358.2 274 67.5
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 3.2e-93 347.8 269 65.8
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 2.2e-89 335.1 314 54.5
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 3.4e-87 327.8 1380 24.7
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 1.3e-86 325.9 445 46.1
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 6.9e-80 303.5 326 50.0
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 6.5e-78 297.0 254 61.0
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 1.9e-77 295.4 258 60.1
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 6.7e-75 287.0 395 45.6
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 7.0e-72 276.9 232 61.2
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 9.7e-66 256.5 214 57.9
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 2.2e-65 255.4 1210 24.9
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.7e-65 254.6 240 52.5
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 9.1e-64 250.0 191 61.3
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.5e-61 242.7 244 52.0
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.0e-58 232.3 201 57.2
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.7e-54 219.2 287 46.0
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 4.0e-51 208.0 182 56.0
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 8.8e-51 206.8 200 56.0
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.5e-50 206.1 229 52.8
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 2.0e-47 195.7 179 54.2
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 2.5e-45 188.7 173 54.3
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 7.2e-45 187.2 149 58.4
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 1.2e-44 186.4 180 54.4
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.7e-41 174.9 207 45.4
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-36 158.7 187 49.7
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-36 158.7 187 49.7
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 6.0e-31 141.0 174 45.4
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 6.8e-27 127.5 479 28.2
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.2e-25 122.5 104 55.8
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 5.4e-24 117.9 118 52.5
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 7.0e-24 117.5 102 56.9
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 1.7e-22 112.8 86 62.8
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 9.5e-21 107.1 82 58.5
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 9.5e-21 107.1 103 47.6
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 1.8e-19 102.8 83 61.4
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 4.4e-18 98.2 79 54.4
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 2.2e-17 95.9 69 65.2
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 6.4e-17 94.4 69 65.2
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 2.7e-15 89.0 358 24.6
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.0e-14 87.0 386 26.9
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.3e-14 85.9 386 26.7
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 3.9e-14 85.1 56 69.6
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 3.9e-14 85.1 406 26.6
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 3.9e-14 85.1 406 26.6
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 4.3e-13 81.6 88 42.0
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 3.6e-12 78.6 74 51.4
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.8e-11 76.3 381 25.7
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.8e-11 74.3 334 25.7
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.2e-10 73.6 386 25.4
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 2.6e-10 72.4 386 25.1
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 2.6e-10 72.4 386 25.1
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 3.8e-09 68.6 46 63.0
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 1.4e-08 66.6 81 46.9
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 2.4e-08 65.9 53 60.4
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 9.2e-08 63.9 374 23.8
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 7.8e-07 60.8 41 61.0
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 3.0e-06 58.9 95 34.7


User provided reference genes

Program Settings