Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G137 Amborella trichopoda HOM05D014378 ORTHO05D015830 5.3e-62 240.7 113 100.0
ATR0584G237 Amborella trichopoda HOM05D014378 ORTHO05D015830 5.9e-21 104.4 119 45.4
ATR0584G268 Amborella trichopoda HOM05D014378 ORTHO05D015830 1.0e-20 103.6 119 44.5
ATR0584G211 Amborella trichopoda HOM05D014378 ORTHO05D015830 3.9e-20 101.7 96 45.8
ATR0752G204 Amborella trichopoda HOM05D014378 ORTHO05D015830 6.2e-18 94.4 102 40.2
ATR0584G090 Amborella trichopoda HOM05D014378 ORTHO05D015830 8.0e-18 94.0 103 45.6
ATR0752G212 Amborella trichopoda HOM05D014378 ORTHO05D015830 1.5e-16 89.7 105 39.0
ATR0584G234 Amborella trichopoda HOM05D014378 ORTHO05D015830 2.1e-10 69.3 110 31.8
ATR0736G016 Amborella trichopoda HOM05D045952 ORTHO05D015830 2.1e-10 69.3 107 35.5
MD02G1018800 Malus domestica HOM05D001603 ORTHO05D001393 3.4e-08 62.0 76 36.8
Glyma.09G195200 Glycine max HOM05D001595 ORTHO05D001573 1.7e-07 59.7 75 33.3
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.7e-07 59.7 70 37.1
CAN.G264.6 Capsicum annuum HOM05D001595 ORTHO05D001573 2.2e-07 59.3 79 31.6
Ca_14639_v3 Cicer arietinum L. HOM05D001595 ORTHO05D001573 2.2e-07 59.3 80 36.2
DCAR_020898 Daucus carota HOM05D012509 ORTHO05D009596 2.2e-07 59.3 102 37.3
Nn1g06066 Nelumbo nucifera HOM05D001595 ORTHO05D001573 2.2e-07 59.3 89 28.1
Os11g0168000 Oryza sativa ssp. japonica HOM05D001595 ORTHO05D001573 2.2e-07 59.3 71 36.6
Glyma.20G168300 Glycine max HOM05D001595 ORTHO05D001573 2.9e-07 58.9 65 38.5
Phvul.006G037100 Phaseolus vulgaris HOM05D001595 ORTHO05D001573 2.9e-07 58.9 76 32.9
ATR0709G060 Amborella trichopoda HOM05D034138 ORTHO05D015830 3.7e-07 58.5 93 29.0
BcaB01g04253 Brassica carinata HOM05D001603 ORTHO05D001393 3.7e-07 58.5 73 38.4
Lj3g0006531 Lotus japonicus HOM05D001595 ORTHO05D001573 3.7e-07 58.5 63 39.7
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 3.7e-07 58.5 82 31.7
VMungo0540G1199 Vigna mungo HOM05D001595 ORTHO05D001573 3.7e-07 58.5 75 34.7
MBI19_g48071_MAGBIO Magnolia biondii HOM05D001595 ORTHO05D001573 6.4e-07 57.8 65 33.8
MD09G1164100 Malus domestica HOM05D001603 ORTHO05D001393 6.4e-07 57.8 71 35.2
Medtr8g099500 Medicago truncatula HOM05D001595 ORTHO05D001573 6.4e-07 57.8 82 34.1
Nitab4.5_0001187g0010 Nicotiana tabacum HOM05D001595 ORTHO05D001573 6.4e-07 57.8 74 31.1
Nitab4.5_0001344g0030 Nicotiana tabacum HOM05D001595 ORTHO05D001573 6.4e-07 57.8 74 31.1
Phvul.003G272700 Phaseolus vulgaris HOM05D001595 ORTHO05D001573 6.4e-07 57.8 78 33.3
Potri.001G306600 Populus trichocarpa HOM05D001595 ORTHO05D001573 8.3e-07 57.4 83 28.9
Sabra16G0192800 Salix brachista HOM05D001595 ORTHO05D001573 8.3e-07 57.4 83 28.9
Hma1.2p1_0240F.1_g100360 Hydrangea macrophylla HOM05D001595 ORTHO05D001573 1.1e-06 57.0 71 32.4
Lj5g0011167 Lotus japonicus HOM05D001595 ORTHO05D001573 1.1e-06 57.0 42 52.4
VMungo0251G0665 Vigna mungo HOM05D001595 ORTHO05D001573 1.1e-06 57.0 86 36.0
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 1.4e-06 56.6 72 38.9
ATR0584G172 Amborella trichopoda HOM05D014378 ORTHO05D015830 1.4e-06 56.6 59 42.4
Aqoxy2G00733 Aquilegia oxysepala HOM05D001595 ORTHO05D001573 1.4e-06 56.6 76 32.9
C03p17510 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-06 56.6 72 36.1
Glyma.06G199900 Glycine max HOM05D001595 ORTHO05D001573 1.4e-06 56.6 76 32.9
Medtr3g049180 Medicago truncatula HOM05D001595 ORTHO05D001573 1.4e-06 56.6 81 33.3
TPR.G3442 Trifolium pratense HOM05D001595 ORTHO05D001573 1.4e-06 56.6 65 35.4
BcaC01g06264 Brassica carinata HOM05D001603 ORTHO05D001393 1.9e-06 56.2 67 35.8
A03p15020 Brassica napus HOM05D001603 ORTHO05D001393 1.9e-06 56.2 72 36.1
BolC3t14164H Brassica oleracea HOM05D001603 ORTHO05D001393 1.9e-06 56.2 72 36.1
BraA03t10796Z Brassica rapa HOM05D001603 ORTHO05D001393 1.9e-06 56.2 72 36.1
GSVIVG01022286001 Vitis vinifera HOM05D001595 ORTHO05D001573 1.9e-06 56.2 76 32.9
Solyc04g071640.1 Solanum lycopersicum HOM05D001595 ORTHO05D001573 2.4e-06 55.8 70 32.9
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 2.4e-06 55.8 82 37.8
TPR.G858 Trifolium pratense HOM05D001595 ORTHO05D001573 2.4e-06 55.8 82 34.1
ATR0736G221 Amborella trichopoda HOM05D045952 ORTHO05D062469 3.2e-06 55.5 73 32.9
CANSAT25G0524 Cannabis sativa HOM05D001595 ORTHO05D001573 3.2e-06 55.5 63 34.9
Glyma.04G164700 Glycine max HOM05D001595 ORTHO05D001573 3.2e-06 55.5 63 36.5
MD09G1163700 Malus domestica HOM05D001603 ORTHO05D001393 3.2e-06 55.5 47 42.6
MBI16_g15525_MAGBIO Magnolia biondii HOM05D001595 ORTHO05D001573 4.1e-06 55.1 81 30.9
Medtr3g095330 Medicago truncatula HOM05D001595 ORTHO05D001573 4.1e-06 55.1 65 29.2
TAR628G0448 Trochodendron aralioides HOM05D001595 ORTHO05D001573 4.1e-06 55.1 78 33.3
DCAR_001404 Daucus carota HOM05D001595 ORTHO05D001573 5.4e-06 54.7 98 26.5
Lj6g0008981 Lotus japonicus HOM05D001595 ORTHO05D001573 5.4e-06 54.7 63 34.9
Sopen04g027630 Solanum pennellii HOM05D001595 ORTHO05D001573 5.4e-06 54.7 70 31.4
Actinidia28428 Actinidia chinensis HOM05D001595 ORTHO05D001573 7.1e-06 54.3 76 31.6
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 7.1e-06 54.3 73 34.2
Cc07_g16880 Coffea canephora HOM05D001595 ORTHO05D001573 7.1e-06 54.3 98 28.6
Glyma.05G187500 Glycine max HOM05D001595 ORTHO05D001573 7.1e-06 54.3 83 26.5
PSO782G1967 Papaver somniferum HOM05D001603 ORTHO05D001393 7.1e-06 54.3 79 32.9
QL10p018398 Quercus lobata HOM05D001595 ORTHO05D001573 7.1e-06 54.3 125 28.0
PGSC0003DMG400006658 Solanum tuberosum HOM05D001595 ORTHO05D001573 7.1e-06 54.3 70 31.4
THA.LOC104812034 Tarenaya hassleriana HOM05D001595 ORTHO05D001573 7.1e-06 54.3 63 34.9
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 9.2e-06 53.9 75 34.7
Lj6g0002778 Lotus japonicus HOM05D001595 ORTHO05D001573 9.2e-06 53.9 63 33.3
TPR.G13564 Trifolium pratense HOM05D001595 ORTHO05D001573 9.2e-06 53.9 80 28.8
GSVIVG01016787001 Vitis vinifera HOM05D001595 ORTHO05D001573 9.2e-06 53.9 76 34.2


User provided reference genes

Program Settings