Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.4e-180 634.0 336 100.0
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 7.7e-109 397.9 315 69.5
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.3e-108 397.1 310 68.1
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.3e-108 396.4 312 69.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.9e-108 396.0 310 67.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.9e-108 396.0 312 68.3
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.3e-107 392.5 312 67.3
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 5.5e-107 391.7 310 68.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.2e-106 390.6 312 68.6
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.6e-106 390.2 310 69.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.6e-106 390.2 314 67.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.6e-106 390.2 312 67.3
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.6e-106 389.0 312 68.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 4.7e-106 388.7 312 67.3
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 4.7e-106 388.7 319 66.5
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 4.7e-106 388.7 319 66.5
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.8e-105 386.7 310 67.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 4.0e-105 385.6 312 67.9
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-104 384.0 319 66.1
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.5e-104 383.6 312 65.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.0e-104 383.3 312 66.3
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.0e-104 383.3 316 66.1
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.6e-104 382.9 310 66.1
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.6e-104 382.9 312 65.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.6e-104 382.9 312 67.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 3.4e-104 382.5 320 65.3
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.4e-104 382.5 312 66.3
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.4e-104 382.5 312 66.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.4e-104 382.1 315 63.5
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 9.8e-104 380.9 312 67.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.8e-104 380.9 320 64.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-103 380.6 319 67.1
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.7e-103 380.2 312 66.3
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.7e-103 380.2 312 66.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.7e-103 380.2 312 67.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.2e-103 379.8 312 65.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 2.2e-103 379.8 312 65.1
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.8e-103 379.4 312 66.3
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.8e-103 379.4 312 65.4
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.7e-103 379.0 315 63.2
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.7e-103 379.0 312 65.7
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 4.9e-103 378.6 320 67.5
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 6.3e-103 378.3 315 63.2
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.1e-102 377.5 312 66.7
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.4e-102 377.1 313 65.5
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.8e-102 376.7 320 63.8
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 4.1e-102 375.6 312 65.1
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.1e-102 375.6 320 63.8
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 5.4e-102 375.2 311 66.6
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 7.0e-102 374.8 312 62.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.0e-102 374.8 320 64.7
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 7.0e-102 374.8 314 65.6
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 9.2e-102 374.4 320 63.4
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-101 374.0 312 62.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.6e-101 373.6 314 65.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.0e-101 373.2 320 64.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.7e-101 372.9 320 64.4
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 7.8e-101 371.3 314 65.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 7.8e-101 371.3 320 64.1
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.3e-100 370.5 321 64.2
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-100 370.5 320 64.4
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 3.9e-100 369.0 308 64.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 5.0e-100 368.6 312 63.8
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.0e-100 368.6 320 64.1
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.1e-99 367.5 321 62.9
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.5e-99 367.1 312 62.8
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 2.5e-99 366.3 313 65.2
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.3e-99 365.5 320 62.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 5.6e-99 365.2 322 62.1
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 7.3e-99 364.8 312 64.4
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 9.5e-99 364.4 312 63.5
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.6e-98 363.6 322 62.1
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.1e-98 363.2 312 62.5
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.8e-98 362.8 312 62.2
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.4e-97 360.5 313 62.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.4e-97 360.5 312 63.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.3e-97 359.8 315 63.2
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.1e-97 359.4 313 63.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 5.2e-97 358.6 323 62.5
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 5.2e-97 358.6 314 62.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.2e-96 357.5 320 62.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.6e-96 356.3 312 62.2
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.4e-96 355.5 312 61.5
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 4.4e-96 355.5 313 62.9
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.8e-96 354.4 310 62.3
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.3e-95 354.0 312 61.9
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.7e-95 353.6 313 61.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.7e-95 353.6 311 64.0
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.2e-95 353.2 312 61.9
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 3.7e-95 352.4 364 57.1
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.9e-95 352.1 315 61.0
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.1e-94 350.9 312 62.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 4.1e-94 349.0 314 62.4
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.2e-93 347.4 314 62.4
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-91 340.9 296 62.5
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.1e-91 340.9 323 58.5
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.5e-91 340.5 279 66.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 9.5e-91 337.8 296 61.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 9.5e-91 337.8 296 61.5
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.6e-90 337.0 347 55.6
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.1e-90 336.7 296 61.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.8e-90 336.3 287 65.2
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.2e-89 332.0 281 65.5
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 9.8e-88 327.8 311 58.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.7e-87 327.0 277 63.9
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.2e-87 326.6 264 66.3
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.7e-87 325.9 321 60.1
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.6e-85 320.5 275 64.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 7.8e-85 318.2 288 60.1
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 7.8e-85 318.2 288 59.4
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.9e-84 315.8 314 56.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.1e-84 315.5 264 64.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.5e-83 313.2 312 58.0
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 6.8e-81 305.1 264 60.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.8e-81 305.1 258 65.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 9.9e-80 301.2 259 64.9
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 6.4e-79 298.5 312 58.0
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 4.6e-77 292.4 335 52.2
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.6e-74 283.9 310 51.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 5.4e-70 268.9 315 49.5
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 7.8e-69 265.0 245 60.8
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.7e-68 261.5 311 51.1
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.1e-67 261.2 230 62.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 4.3e-67 259.2 315 46.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.4e-64 249.6 223 59.2
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.4e-62 243.4 312 49.0
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 6.0e-61 238.8 285 47.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.0e-56 223.8 174 71.8
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.5e-56 222.6 393 41.5
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 4.2e-54 216.1 187 66.8
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 5.1e-52 209.1 178 68.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 3.8e-47 193.0 248 50.0
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.0e-44 183.3 155 65.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 6.2e-42 175.6 143 72.0
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.1e-41 174.9 158 65.8
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.1e-37 160.6 121 75.2
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 6.1e-37 159.1 117 76.1
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-32 144.4 121 57.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.9e-32 142.5 249 41.8
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 2.2e-31 140.6 313 32.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 7.2e-30 135.6 124 62.1
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 7.4e-27 125.6 245 37.6
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.3e-23 114.8 93 66.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 6.5e-23 112.5 89 64.0
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.2e-21 108.2 91 63.7
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.7e-21 107.1 110 52.7
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.7e-20 102.4 102 62.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.1e-17 95.1 149 47.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 7.0e-17 92.4 80 60.0
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.9e-12 76.6 84 51.2
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-10 71.6 58 58.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 7.0e-09 65.9 351 25.1
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 9.1e-09 65.5 62 59.7


User provided reference genes

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