Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.1e-45 184.9 100 100.0
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.7e-11 72.8 78 57.7
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 8.4e-11 70.5 70 57.1
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.1e-10 70.1 70 58.6
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.1e-10 70.1 77 51.9
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.4e-10 69.7 69 53.6
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.9e-10 69.3 48 68.8
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.5e-10 68.9 80 50.0
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.5e-10 68.9 69 53.6
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.5e-10 68.9 73 57.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.5e-10 68.9 80 55.0
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.5e-10 68.9 80 55.0
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 3.2e-10 68.6 48 68.8
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 3.2e-10 68.6 66 57.6
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 4.2e-10 68.2 74 55.4
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 4.2e-10 68.2 69 52.2
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 5.5e-10 67.8 61 59.0
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 9.3e-10 67.0 67 53.7
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 1.2e-09 66.6 62 62.9
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 2.1e-09 65.9 74 54.1
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.1e-09 65.9 46 63.0
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 2.1e-09 65.9 76 52.6
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.1e-09 65.9 82 48.8
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.7e-09 65.5 49 71.4
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 3.5e-09 65.1 67 52.2
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 3.5e-09 65.1 80 47.5
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 6.0e-09 64.3 52 65.4
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 6.0e-09 64.3 67 52.2
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 7.9e-09 63.9 48 68.8
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.0e-08 63.5 46 69.6
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 1.3e-08 63.2 80 43.8
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.8e-08 62.8 45 64.4
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.8e-08 62.8 66 57.6
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.8e-08 62.8 52 61.5
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.8e-08 62.8 73 53.4
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.8e-08 62.8 67 58.2
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.8e-08 62.8 53 62.3
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 2.3e-08 62.4 52 63.5
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.3e-08 62.4 52 63.5
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 2.3e-08 62.4 53 60.4
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 2.3e-08 62.4 80 52.5
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 3.0e-08 62.0 48 60.4
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 3.0e-08 62.0 48 64.6
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 3.9e-08 61.6 74 50.0
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 3.9e-08 61.6 45 68.9
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 3.9e-08 61.6 66 54.5
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 5.1e-08 61.2 66 56.1
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 5.1e-08 61.2 66 48.5
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 5.1e-08 61.2 80 47.5
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 5.1e-08 61.2 52 63.5
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 5.1e-08 61.2 52 63.5
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 6.7e-08 60.8 66 48.5
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 6.7e-08 60.8 64 50.0
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 6.7e-08 60.8 49 65.3
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 6.7e-08 60.8 73 47.9
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 8.7e-08 60.5 66 56.1
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 8.7e-08 60.5 66 48.5
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 8.7e-08 60.5 73 45.2
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 1.1e-07 60.1 61 55.7
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.1e-07 60.1 63 46.0
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.5e-07 59.7 75 49.3
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.5e-07 59.7 76 53.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 1.5e-07 59.7 74 48.6
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-07 58.9 38 68.4
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-07 58.9 38 68.4
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-07 58.9 38 68.4
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-07 58.9 38 68.4
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 2.5e-07 58.9 79 50.6
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 2.5e-07 58.9 74 45.9
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.5e-07 58.9 41 68.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.5e-07 58.9 80 47.5
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 3.3e-07 58.5 53 58.5
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 3.3e-07 58.5 49 59.2
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 4.3e-07 58.2 75 49.3
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 4.3e-07 58.2 66 47.0
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 4.3e-07 58.2 50 58.0
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 9.6e-07 57.0 50 54.0
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 9.6e-07 57.0 36 69.4
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.6e-06 56.2 50 54.0
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.8e-06 55.5 75 44.0
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 3.7e-06 55.1 54 51.9
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 3.7e-06 55.1 68 52.9
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.8e-06 54.7 69 46.4
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 4.8e-06 54.7 36 63.9
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 4.8e-06 54.7 57 54.4
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 4.8e-06 54.7 36 63.9
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 4.8e-06 54.7 83 43.4


User provided reference genes

Program Settings