Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 3.1e-87 325.1 166 100.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 3.0e-77 292.0 161 91.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.2e-54 216.9 166 68.1
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.3e-53 213.4 161 64.0
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.9e-53 211.8 165 64.8
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 8.7e-53 210.7 169 65.7
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 8.7e-53 210.7 161 63.4
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.1e-52 210.3 169 63.9
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.3e-52 208.8 172 61.6
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 9.6e-52 207.2 165 63.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.6e-51 206.5 172 61.6
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.6e-51 205.3 164 65.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.6e-51 205.3 174 62.1
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.4e-50 203.4 167 61.7
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 4.0e-50 201.8 167 64.1
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 6.9e-50 201.1 175 62.3
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 9.9e-49 197.2 168 63.7
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.7e-48 196.4 183 60.1
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.4e-47 193.4 171 57.3
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 4.2e-47 191.8 170 60.0
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 9.3e-47 190.7 172 57.6
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.2e-46 190.3 169 62.1
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.2e-46 190.3 168 61.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 1.6e-46 189.9 182 56.6
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 2.1e-46 189.5 170 59.4
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 4.6e-46 188.3 169 58.6
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 4.6e-46 188.3 171 59.6
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 4.6e-46 188.3 164 61.0
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 4.6e-46 188.3 160 60.6
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.0e-46 188.0 160 60.0
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 6.0e-46 188.0 169 58.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 7.8e-46 187.6 160 60.0
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.0e-45 187.2 168 58.3
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.0e-45 187.2 172 60.5
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.3e-45 186.8 168 57.1
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 2.3e-45 186.0 170 58.2
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.0e-45 185.7 169 58.6
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.9e-45 185.3 168 57.7
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 6.6e-45 184.5 169 58.0
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.5e-44 183.3 159 59.7
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.9e-44 183.0 178 57.9
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 2.5e-44 182.6 176 56.2
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.3e-44 182.2 167 58.1
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 3.3e-44 182.2 170 57.6
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.3e-44 181.8 165 57.0
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.3e-44 181.0 160 57.5
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 9.6e-44 180.6 176 56.2
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.6e-43 179.9 178 55.6
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.8e-43 178.3 172 55.8
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.8e-42 176.4 179 53.6
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 2.4e-42 176.0 169 56.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 6.9e-42 174.5 179 52.0
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 9.0e-42 174.1 163 54.6
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.5e-41 171.8 172 52.3
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 7.6e-41 171.0 106 76.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 9.9e-41 170.6 175 52.0
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.3e-40 170.2 172 51.2
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.7e-40 169.9 166 56.0
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.2e-40 169.5 174 52.9
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.9e-40 169.1 172 54.1
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 3.8e-40 168.7 172 53.5
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 3.8e-40 168.7 172 53.5
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 3.8e-40 168.7 174 52.3
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 4.9e-40 168.3 175 53.7
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 6.4e-40 167.9 175 51.4
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 8.4e-40 167.5 172 52.9
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 7.1e-39 164.5 177 52.0
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 9.3e-39 164.1 163 50.9
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.2e-38 163.7 166 52.4
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.6e-38 163.3 169 49.7
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.7e-38 162.5 104 76.9
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 2.7e-38 162.5 165 52.7
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.5e-38 162.2 173 52.0
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.6e-38 161.8 169 53.3
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.0e-37 160.6 112 71.4
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.3e-37 160.2 168 50.0
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.3e-37 160.2 160 55.6
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.8e-37 159.8 169 53.3
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.3e-37 159.5 132 59.8
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 3.0e-37 159.1 178 48.9
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 3.9e-37 158.7 169 50.3
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 3.9e-37 158.7 163 52.1
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.7e-37 157.9 173 50.9
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.7e-37 157.5 173 50.9
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 8.7e-37 157.5 173 50.9
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.5e-36 156.8 163 52.1
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.5e-36 156.8 151 54.3
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.5e-36 156.8 170 52.9
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.9e-36 156.4 168 54.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.5e-36 156.0 158 51.3
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.6e-36 154.8 168 53.0
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 9.6e-36 154.1 170 50.6
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.3e-35 153.7 168 51.8
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.6e-35 153.3 170 51.2
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.2e-35 151.4 240 40.8
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 6.2e-35 151.4 179 49.2
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.1e-34 150.6 124 56.5
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.8e-34 149.8 159 50.3
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.4e-34 149.4 150 54.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 3.1e-34 149.1 165 49.1
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 3.1e-34 149.1 176 48.9
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 5.3e-34 148.3 164 50.0
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.5e-33 146.7 170 48.8
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 2.0e-33 146.4 156 50.0
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.6e-33 146.0 185 48.6
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 4.5e-33 145.2 169 47.9
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 7.6e-33 144.4 167 48.5
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 7.6e-33 144.4 172 47.7
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.0e-32 144.1 136 58.8
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 2.2e-32 142.9 168 48.8
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 6.5e-32 141.4 178 45.5
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.9e-31 139.8 106 65.1
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 1.9e-31 139.8 177 44.1
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 3.2e-31 139.0 182 46.2
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 3.2e-31 139.0 161 50.3
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 3.2e-31 139.0 121 57.9
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.6e-30 136.7 134 53.7
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.5e-28 130.2 177 45.8
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 3.3e-28 129.0 133 51.9
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 5.7e-28 128.3 132 50.8
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 1.3e-27 127.1 180 43.3
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 4.8e-27 125.2 106 58.5
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.1e-26 122.5 167 45.5
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.6e-25 119.4 80 75.0
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.4e-25 119.0 76 76.3
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 5.0e-24 115.2 106 53.8
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.2e-23 112.5 106 52.8
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 4.6e-22 108.6 166 37.3
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.1e-22 108.2 103 60.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.5e-20 103.6 126 46.8
ATR1127G058 Amborella trichopoda HOM05D004876 ORTHO05D005488 3.3e-20 102.4 58 82.8
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.5e-17 93.6 108 45.4
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 2.3e-13 79.7 105 46.7
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 2.3e-13 79.7 105 46.7
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 8.8e-13 77.8 99 49.5
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 2.5e-12 76.3 108 40.7
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.0e-08 64.3 110 31.8
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.2e-08 63.2 73 47.9
SMO347G0178 Selaginella moellendorffii HOM05D004876 ORTHO05D005488 7.2e-07 58.2 95 38.9


User provided reference genes

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