Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 6.3e-299 1030.0 527 100.0
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.8e-224 782.7 507 78.7
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 3.9e-224 781.6 506 77.7
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.5e-217 758.4 506 74.7
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.5e-217 758.4 493 76.5
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 6.0e-217 757.7 521 73.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 7.9e-217 757.3 506 74.9
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.0e-216 756.9 508 74.0
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.8e-216 756.1 509 74.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.0e-216 755.4 506 74.3
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 3.9e-216 755.0 496 75.6
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 5.1e-216 754.6 452 81.2
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 5.1e-216 754.6 496 75.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 6.7e-216 754.2 479 77.0
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.1e-215 753.4 505 74.3
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.9e-215 752.7 444 82.2
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 2.5e-215 752.3 442 81.4
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.3e-215 751.9 509 74.1
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 4.3e-215 751.5 452 80.3
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 5.6e-215 751.1 452 80.1
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 9.6e-215 750.4 505 74.3
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.6e-214 749.6 442 82.4
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.1e-214 749.2 442 82.1
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.1e-214 749.2 505 73.1
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 2.8e-214 748.8 515 73.0
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.8e-214 748.8 442 82.1
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 3.7e-214 748.4 523 72.8
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 4.8e-214 748.0 507 73.4
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 6.2e-214 747.7 442 81.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 8.2e-214 747.3 442 82.1
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.8e-213 746.1 442 81.7
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.8e-213 746.1 506 73.7
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.4e-213 745.7 448 81.2
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.4e-213 745.7 505 73.7
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 4.0e-213 745.0 442 81.4
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 5.3e-213 744.6 507 74.4
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.5e-212 743.0 442 81.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.0e-212 742.7 505 73.1
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 7.6e-212 740.7 441 80.7
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.3e-211 740.0 506 73.5
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 2.9e-211 738.8 506 72.7
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.9e-211 738.8 528 71.8
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 3.8e-211 738.4 524 71.6
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.9e-211 738.0 508 73.6
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 4.9e-211 738.0 497 73.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 8.4e-211 737.3 445 80.2
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.4e-210 736.5 445 80.2
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.9e-210 736.1 509 71.1
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 7.1e-210 734.2 511 70.8
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 7.1e-210 734.2 484 75.6
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 9.3e-210 733.8 507 72.6
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.2e-209 733.4 516 70.7
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.6e-209 733.0 439 80.6
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.6e-209 733.0 505 72.7
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 2.7e-209 732.3 504 71.2
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 4.6e-209 731.5 509 72.7
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 4.6e-209 731.5 492 73.6
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 6.0e-209 731.1 521 70.1
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.0e-208 730.3 517 71.6
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 2.3e-208 729.2 443 80.4
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 6.7e-208 727.6 445 79.8
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.5e-207 726.5 458 77.5
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 3.3e-207 725.3 517 71.0
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 9.7e-207 723.8 461 77.0
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 1.6e-206 723.0 422 83.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.2e-206 722.6 453 77.0
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.8e-206 722.2 462 77.7
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.8e-206 721.5 525 70.1
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 4.8e-206 721.5 445 78.7
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 6.3e-206 721.1 445 78.2
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 8.2e-206 720.7 454 78.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.4e-205 719.9 511 72.6
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.4e-205 719.9 445 78.4
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.4e-205 719.2 512 70.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 9.0e-205 717.2 502 71.1
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 9.0e-205 717.2 518 71.2
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 9.0e-205 717.2 452 77.7
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.0e-204 716.1 443 80.1
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.6e-204 715.7 504 70.8
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.3e-203 713.4 517 69.1
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.4e-202 709.9 424 80.4
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.5e-202 709.1 475 74.5
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 5.5e-202 708.0 507 71.4
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.7e-201 705.7 508 70.5
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 6.1e-201 704.5 491 71.5
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.3e-199 698.7 506 70.2
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 4.3e-199 698.4 503 70.6
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 4.3e-199 698.4 410 83.2
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.2e-198 696.0 508 71.3
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 6.3e-198 694.5 452 74.6
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.4e-197 692.6 431 78.0
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-196 690.3 525 67.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 2.0e-196 689.5 445 76.2
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.6e-196 689.1 475 72.8
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.0e-195 687.2 545 65.3
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 3.0e-192 675.6 442 73.8
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 9.1e-181 637.5 524 61.3
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 4.7e-177 625.2 372 80.6
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 4.7e-169 598.6 518 63.3
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 8.8e-168 594.3 411 71.8
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 4.5e-164 582.0 515 56.7
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.0e-155 554.3 495 56.0
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 6.6e-155 551.6 389 72.0
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.3e-150 537.3 385 70.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 8.3e-150 534.6 385 70.6
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.1e-146 524.2 435 58.2
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 5.2e-144 515.4 468 56.2
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 6.6e-115 418.7 491 47.9
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 4.5e-111 406.0 484 46.9
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 8.1e-105 385.2 483 45.5
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 2.4e-104 383.6 435 49.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 2.9e-102 376.7 442 49.1
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.8e-102 376.3 445 48.5
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.2e-101 373.2 445 48.3
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.1e-100 370.5 253 73.9
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.7e-97 359.8 454 48.9
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.0e-94 351.7 364 53.3
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.9e-87 325.9 453 45.3
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.3e-86 324.7 481 41.0
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 4.5e-79 299.7 176 80.7
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.1e-72 278.5 169 78.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 3.0e-43 180.6 170 60.6
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 3.7e-41 173.7 150 60.7
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.7e-38 164.9 137 60.6
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.3e-37 159.5 131 64.9
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.1e-27 129.0 88 73.9
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.1e-27 127.5 105 61.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.6e-23 115.2 141 45.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 4.3e-21 107.1 104 60.6
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.6e-18 96.3 58 81.0
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-06 58.9 47 57.4
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.7e-06 58.5 38 71.1
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 8.7e-06 56.2 102 41.2


User provided reference genes

Program Settings