Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 2.3e-55 218.8 122 100.0
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.9e-29 132.1 127 64.6
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.2e-28 128.6 125 64.0
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.2e-28 128.3 124 62.9
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.2e-28 128.3 123 64.2
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.2e-28 128.3 121 63.6
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 5.4e-28 127.9 128 64.8
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 7.1e-28 127.5 126 63.5
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.2e-27 126.7 122 59.8
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 64.0
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.6e-27 126.3 124 62.1
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.6e-27 126.3 124 62.9
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.1e-27 125.9 126 63.5
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 4.6e-27 124.8 123 61.0
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 4.6e-27 124.8 126 61.9
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 6.0e-27 124.4 124 59.7
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 7.8e-27 124.0 126 61.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 7.8e-27 124.0 125 62.4
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.0e-26 123.6 125 63.2
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.3e-26 122.5 125 61.6
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.3e-26 122.5 125 61.6
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.3e-26 122.5 122 60.7
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.0e-26 122.1 123 59.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 3.9e-26 121.7 126 61.9
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 3.9e-26 121.7 122 62.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 5.1e-26 121.3 126 58.7
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 5.1e-26 121.3 128 60.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 6.6e-26 120.9 129 59.7
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 6.6e-26 120.9 123 60.2
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 8.7e-26 120.6 123 60.2
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.7e-26 120.6 123 60.2
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 8.7e-26 120.6 124 57.3
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.5e-25 119.8 118 61.9
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.5e-25 119.8 126 59.5
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.9e-25 119.4 126 59.5
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-25 119.4 124 59.7
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-25 119.4 124 59.7
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.9e-25 119.4 120 58.3
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.5e-25 119.0 120 59.2
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.5e-25 119.0 120 58.3
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.5e-25 119.0 126 61.9
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.3e-25 118.6 123 59.3
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.3e-25 118.6 123 59.3
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 7.3e-25 117.5 123 57.7
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.3e-25 117.5 124 58.9
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.3e-25 117.5 123 59.3
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.3e-25 117.5 126 61.1
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 7.3e-25 117.5 128 57.8
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.3e-25 117.5 128 57.8
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.6e-25 117.1 123 57.7
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.6e-25 117.1 123 57.7
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 58.1
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 58.1
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.3e-24 116.7 120 56.7
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.6e-24 116.3 124 56.5
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.6e-24 116.3 119 56.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-24 116.3 123 58.5
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.6e-24 116.3 122 55.7
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.6e-24 116.3 126 58.7
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 2.1e-24 115.9 94 70.2
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.1e-24 115.9 126 57.9
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-24 115.5 123 56.9
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 3.6e-24 115.2 123 57.7
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.6e-24 115.2 117 59.0
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 3.6e-24 115.2 123 57.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.8e-24 114.8 100 62.0
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 4.8e-24 114.8 127 59.1
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-24 114.8 124 56.5
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-24 114.8 123 56.9
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-24 114.8 123 56.9
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.8e-24 114.8 126 59.5
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 6.2e-24 114.4 125 57.6
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 8.1e-24 114.0 126 57.9
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.1e-24 114.0 119 57.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-23 113.6 118 58.5
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 60.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-23 113.6 121 58.7
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.8e-23 112.8 126 51.6
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 1.8e-23 112.8 124 56.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 2.4e-23 112.5 119 58.8
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 2.4e-23 112.5 122 57.4
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.4e-23 112.5 124 57.3
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.4e-23 112.5 93 68.8
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.1e-23 112.1 127 55.1
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.1e-23 112.1 125 58.4
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 4.0e-23 111.7 126 58.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.0e-23 111.7 119 56.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 5.3e-23 111.3 123 55.3
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 6.9e-23 110.9 126 56.3
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.9e-23 110.9 124 56.5
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 9.0e-23 110.5 127 54.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 9.0e-23 110.5 129 55.0
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 9.0e-23 110.5 126 54.8
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 122 60.7
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.2e-22 110.2 119 55.5
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-22 109.8 125 54.4
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.5e-22 109.8 123 56.9
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-22 109.8 127 54.3
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.0e-22 109.4 99 62.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.6e-22 109.0 128 57.0
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.6e-22 109.0 127 56.7
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 2.6e-22 109.0 122 57.4
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 3.4e-22 108.6 125 56.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 4.4e-22 108.2 122 54.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 5.8e-22 107.8 120 55.8
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 5.8e-22 107.8 115 55.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.6e-22 107.5 128 55.5
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.9e-22 107.1 100 65.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.3e-21 106.7 125 53.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.7e-21 106.3 125 56.0
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 2.9e-21 105.5 127 59.8
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.9e-21 105.5 125 54.4
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 3.8e-21 105.1 128 53.9
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 6.4e-21 104.4 120 55.0
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 6.4e-21 104.4 95 64.2
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-20 103.6 122 55.7
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.4e-20 103.2 124 55.6
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.9e-20 102.8 128 51.6
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.4e-20 102.4 121 54.5
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.4e-20 102.4 128 51.6
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 4.2e-20 101.7 105 58.1
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 4.2e-20 101.7 105 58.1
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 4.2e-20 101.7 105 58.1
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.4e-20 101.3 125 57.6
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 5.4e-20 101.3 123 52.0
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 9.3e-20 100.5 120 51.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.6e-19 99.8 118 51.7
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.6e-19 99.8 125 56.0
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 3.5e-19 98.6 121 52.9
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 3.5e-19 98.6 121 52.9
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 3.5e-19 98.6 120 52.5
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 4.6e-19 98.2 124 53.2
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 6.0e-19 97.8 124 53.2
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 6.0e-19 97.8 124 53.2
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 6.0e-19 97.8 122 51.6
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 6.0e-19 97.8 126 51.6
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 6.0e-19 97.8 126 50.0
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 7.9e-19 97.4 123 52.8
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.3e-18 96.7 122 52.5
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.7e-18 96.3 124 53.2
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 1.7e-18 96.3 122 53.3
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.3e-18 95.9 126 50.0
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.1e-18 94.7 130 51.5
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.5e-17 93.2 119 50.4
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.5e-17 93.2 109 56.0
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.9e-17 92.8 122 48.4
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 4.3e-17 91.7 129 48.8
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.6e-16 89.7 122 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 4.8e-16 88.2 89 52.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.0e-15 85.1 126 42.9
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 6.9e-15 84.3 123 39.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.6e-14 82.4 126 49.2
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.2e-12 75.5 55 81.8
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 3.2e-12 75.5 77 58.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 4.2e-12 75.1 128 46.9
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.6e-11 73.2 116 41.4
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 4.6e-11 71.6 126 42.9
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 7.9e-11 70.9 121 41.3
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.8e-10 69.7 105 43.8
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 4.8e-08 61.6 77 49.4
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 3.4e-06 55.5 109 43.1
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.0e-05 53.9 73 46.6


User provided reference genes

Program Settings