Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.8e-86 322.8 187 100.0
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 3.2e-80 302.0 179 98.3
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 7.2e-80 300.8 179 98.3
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 7.2e-80 300.8 179 97.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 9.4e-80 300.4 179 97.8
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.4e-80 300.4 179 97.8
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.4e-80 300.4 179 97.8
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 9.4e-80 300.4 179 97.8
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.2e-79 300.1 179 97.2
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.2e-79 300.1 179 97.2
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.2e-79 300.1 180 96.7
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.6e-79 299.7 179 96.6
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.6e-79 299.7 179 97.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.6e-79 299.7 179 96.6
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.6e-79 299.7 179 96.6
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.1e-79 299.3 179 97.2
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 2.1e-79 299.3 179 97.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 2.7e-79 298.9 179 97.2
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.7e-79 298.9 179 96.6
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.7e-79 298.9 186 94.6
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.6e-79 298.5 179 97.8
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 3.6e-79 298.5 180 96.1
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.6e-79 298.1 179 97.2
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 4.6e-79 298.1 179 96.6
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-79 298.1 179 96.6
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 6.1e-79 297.7 179 97.8
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 6.1e-79 297.7 179 96.6
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 6.1e-79 297.7 180 95.6
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 6.1e-79 297.7 186 93.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 6.1e-79 297.7 179 97.8
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 7.9e-79 297.4 179 96.1
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 7.9e-79 297.4 179 96.6
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 7.9e-79 297.4 180 96.1
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 7.9e-79 297.4 186 93.5
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 7.9e-79 297.4 179 96.6
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.0e-78 297.0 186 93.5
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.0e-78 297.0 179 96.1
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.0e-78 297.0 186 94.1
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.0e-78 297.0 186 94.1
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 96.1
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 96.1
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.4e-78 296.6 180 95.0
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.4e-78 296.6 180 95.0
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 96.6
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 97.2
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.4e-78 296.6 186 93.0
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 96.1
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.4e-78 296.6 180 95.0
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 96.1
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.4e-78 296.6 179 96.1
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.8e-78 296.2 179 96.1
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.8e-78 296.2 178 97.2
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.8e-78 296.2 179 97.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.8e-78 296.2 179 96.6
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.8e-78 296.2 178 97.2
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.8e-78 296.2 186 93.0
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.3e-78 295.8 179 96.6
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.3e-78 295.8 179 96.1
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.3e-78 295.8 179 95.5
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.3e-78 295.8 179 96.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.3e-78 295.8 179 96.1
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.3e-78 295.8 179 96.1
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.0e-78 295.4 179 96.1
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.0e-78 295.4 179 96.1
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 3.0e-78 295.4 179 96.1
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 3.0e-78 295.4 179 96.1
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.0e-78 295.4 179 95.5
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 3.0e-78 295.4 180 95.0
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 3.9e-78 295.0 179 95.5
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.9e-78 295.0 179 95.5
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.9e-78 295.0 179 95.5
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.9e-78 295.0 186 93.0
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 5.1e-78 294.7 179 95.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 5.1e-78 294.7 179 96.1
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.1e-78 294.7 179 96.1
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 5.1e-78 294.7 179 95.0
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.7e-78 294.3 179 95.5
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 8.8e-78 293.9 186 92.5
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 8.8e-78 293.9 179 95.5
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-78 293.9 179 95.5
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 8.8e-78 293.9 180 94.4
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.1e-77 293.5 179 95.5
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.1e-77 293.5 179 95.5
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.1e-77 293.5 179 95.5
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.1e-77 293.5 179 95.5
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.1e-77 293.5 179 95.5
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.1e-77 293.5 179 95.5
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.5e-77 293.1 178 95.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.0e-77 292.7 179 95.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.0e-77 292.7 179 95.0
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.0e-77 292.7 179 95.0
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.5e-77 292.4 179 95.0
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.5e-77 292.4 179 95.0
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-77 292.4 179 95.0
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.5e-77 292.4 179 95.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 2.5e-77 292.4 179 95.0
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.5e-77 292.4 179 95.5
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.3e-77 292.0 179 94.4
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.3e-77 292.0 179 95.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.3e-77 291.6 179 94.4
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.3e-77 291.6 180 94.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 7.4e-77 290.8 179 94.4
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 7.4e-77 290.8 178 94.4
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.3e-76 290.0 179 93.9
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.7e-76 289.7 179 93.9
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 4.8e-76 288.1 179 93.3
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.8e-76 288.1 179 93.9
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.8e-76 288.1 179 93.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 4.8e-76 288.1 186 90.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.4e-75 286.6 179 92.7
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 4.1e-75 285.0 179 92.2
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.3e-73 280.0 168 97.0
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.4e-70 270.0 161 98.8
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 3.0e-70 268.9 179 90.5
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.0e-70 268.9 235 63.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.7e-68 263.1 178 87.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.7e-68 263.1 178 87.1
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.1e-67 258.8 166 90.4
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 5.3e-67 258.1 169 89.3
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.9e-66 254.6 181 84.0
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-63 246.5 179 81.0
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.0e-63 244.2 179 81.6
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.8e-62 243.0 148 98.0
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 4.4e-61 238.4 147 96.6
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 5.7e-61 238.0 148 91.9
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.2e-60 236.1 147 95.9
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 2.4e-59 232.6 165 84.8
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 3.1e-59 232.3 147 94.6
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.6e-58 229.9 158 77.8
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.0e-57 227.3 178 79.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.3e-57 226.9 183 69.9
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.9e-57 225.7 137 97.8
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.8e-57 225.3 166 79.5
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 8.8e-54 214.2 166 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 3.1e-51 205.7 137 89.1
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 4.1e-51 205.3 109 89.0
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 7.0e-51 204.5 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 5.0e-49 198.4 159 76.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.4e-46 190.3 190 60.5
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.8e-43 179.9 92 93.5
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.3e-41 173.7 88 92.0
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.5e-40 169.5 88 89.8
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 3.5e-34 149.1 117 69.2
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 6.6e-33 144.8 127 60.6
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.2e-28 129.8 92 72.8
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.2e-22 108.6 179 42.5
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 7.1e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.2e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.0e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.5e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.2e-07 60.8 60 53.3


User provided reference genes

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