Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 6.0e-183 644.0 326 100.0
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 3.5e-82 309.3 269 55.8
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.9e-80 303.5 329 48.6
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.9e-80 303.5 267 55.1
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 1.4e-78 297.4 323 50.8
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 1.8e-78 297.0 285 52.3
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 4.0e-78 295.8 293 50.2
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 9.0e-78 294.7 316 50.0
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 9.0e-78 294.7 316 50.0
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.2e-77 294.3 269 53.2
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 1.2e-77 294.3 313 48.6
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 1.5e-77 293.9 269 55.0
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.0e-77 293.5 269 55.4
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 2.0e-77 293.5 300 50.7
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 3.4e-77 292.7 315 48.3
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 5.8e-77 292.0 288 53.1
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 2.2e-76 290.0 338 48.5
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 2.9e-76 289.7 273 53.8
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 2.9e-76 289.7 269 53.2
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.9e-76 289.7 332 49.1
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 3.8e-76 289.3 323 49.5
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 6.4e-76 288.5 269 52.8
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 8.4e-76 288.1 324 47.8
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 1.1e-75 287.7 269 51.3
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.4e-75 287.3 303 51.5
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 1.9e-75 287.0 328 49.7
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.9e-75 287.0 326 46.9
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.9e-75 287.0 326 46.9
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 2.4e-75 286.6 328 48.8
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 3.2e-75 286.2 339 48.7
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.2e-75 286.2 269 52.8
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 3.2e-75 286.2 273 52.7
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 3.2e-75 286.2 332 47.3
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 9.3e-75 284.6 332 46.1
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 9.3e-75 284.6 296 48.0
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.2e-74 284.3 266 52.6
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 1.6e-74 283.9 325 48.9
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 2.7e-74 283.1 270 52.2
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 1.3e-73 280.8 267 52.8
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 1.7e-73 280.4 330 46.1
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.7e-73 280.4 267 50.2
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 2.3e-73 280.0 322 48.8
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 2.3e-73 280.0 307 47.9
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 3.0e-73 279.6 273 53.8
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 5.1e-73 278.9 319 46.7
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 5.1e-73 278.9 335 47.2
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 6.6e-73 278.5 311 46.0
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 6.6e-73 278.5 266 51.9
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 8.7e-73 278.1 322 48.4
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 8.7e-73 278.1 269 52.4
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.1e-72 277.7 266 51.9
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 1.9e-72 276.9 300 49.3
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 2.5e-72 276.6 331 47.1
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 2.5e-72 276.6 287 50.2
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 5.6e-72 275.4 298 46.0
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 5.6e-72 275.4 298 46.0
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 5.6e-72 275.4 269 50.2
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 5.6e-72 275.4 298 47.3
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 9.6e-72 274.6 313 45.7
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.6e-71 273.9 273 50.9
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 2.1e-71 273.5 327 47.4
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 4.8e-71 272.3 314 46.2
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 4.8e-71 272.3 334 45.2
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 1.1e-70 271.2 300 46.7
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 5.3e-70 268.9 270 51.9
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 9.9e-69 264.6 275 48.7
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.2e-68 263.5 295 49.2
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 9.3e-67 258.1 324 43.2
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 1.6e-66 257.3 322 46.6
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 4.6e-66 255.8 300 45.7
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 7.9e-66 255.0 274 49.3
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 7.9e-66 255.0 289 46.7
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 3.0e-65 253.1 296 46.3
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 3.9e-65 252.7 311 46.9
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.1e-64 251.1 326 45.7
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 1.1e-64 251.1 333 45.9
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 2.5e-64 250.0 324 47.5
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 3.3e-64 249.6 324 47.2
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 4.3e-64 249.2 324 44.4
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 9.6e-64 248.1 325 46.2
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 9.6e-64 248.1 324 45.7
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 2.1e-63 246.9 317 47.0
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 6.2e-63 245.4 318 46.2
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 6.2e-63 245.4 318 46.2
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 8.1e-63 245.0 280 46.8
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 8.1e-63 245.0 268 48.1
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 2.4e-62 243.4 272 49.3
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.0e-57 228.0 332 41.9
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 4.3e-56 222.6 327 43.1
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 5.6e-56 222.2 313 44.1
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.3e-49 201.1 265 39.2
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 5.1e-49 199.1 202 49.5
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 3.6e-42 176.4 180 45.6
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 2.2e-36 157.1 122 63.9
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.4e-33 147.9 120 59.2
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 3.7e-31 139.8 185 40.0
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 1.4e-30 137.9 269 28.6
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.6e-29 133.7 289 31.5
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 4.1e-22 109.8 291 28.2
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 3.5e-21 106.7 231 35.9
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 1.9e-19 100.9 178 38.8
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 3.2e-19 100.1 131 42.0
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 1.8e-14 84.3 105 40.0
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 2.4e-14 84.0 108 39.8
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 3.1e-14 83.6 298 25.8
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 8.3e-07 58.9 72 40.3


User provided reference genes

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