Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.1e-219 766.5 443 100.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.0e-129 465.7 272 77.6
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 5.2e-129 465.3 285 76.5
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.5e-128 463.8 295 73.2
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.0e-128 463.4 287 76.0
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 4.4e-128 462.2 273 78.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 9.8e-128 461.1 292 74.7
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.2e-127 459.9 271 77.5
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.7e-127 459.1 292 73.6
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 3.7e-127 459.1 292 73.6
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 6.4e-127 458.4 293 74.7
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 7.0e-126 454.9 289 73.0
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 9.2e-126 454.5 285 74.0
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.2e-126 454.5 289 73.7
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 3.5e-125 452.6 272 76.1
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.5e-125 452.6 275 75.6
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.5e-125 452.6 291 74.2
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 3.5e-125 452.6 288 72.9
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 6.0e-125 451.8 275 77.5
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 7.8e-125 451.4 323 67.5
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 7.8e-125 451.4 270 77.4
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 5.0e-124 448.7 289 72.3
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 6.6e-124 448.4 260 76.9
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 6.6e-124 448.4 257 77.8
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.5e-123 447.2 260 77.3
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.9e-123 446.8 290 72.8
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.9e-123 446.8 291 72.5
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 2.5e-123 446.4 283 72.4
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 3.3e-123 446.0 303 70.0
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 4.3e-123 445.7 278 74.1
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 9.5e-123 444.5 298 69.5
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.2e-122 444.1 286 72.0
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.6e-122 443.7 288 71.2
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.6e-122 443.7 266 75.9
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.1e-122 443.4 273 74.4
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.8e-122 443.0 248 79.8
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.8e-122 443.0 247 80.2
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 3.6e-122 442.6 298 69.1
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.7e-122 442.2 264 77.7
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 6.2e-122 441.8 266 75.2
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 8.0e-122 441.4 248 78.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.1e-121 441.0 264 77.3
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.4e-121 440.7 292 70.9
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 3.1e-121 439.5 266 74.8
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 4.0e-121 439.1 258 77.9
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 8.9e-121 438.0 263 76.4
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.5e-120 437.2 335 64.8
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 2.0e-120 436.8 266 74.1
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 2.6e-120 436.4 266 75.6
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.6e-120 436.4 268 75.4
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.4e-120 436.0 286 71.7
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 5.8e-120 435.3 312 67.3
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 9.8e-120 434.5 273 74.4
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-119 433.7 317 64.7
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.7e-119 433.7 292 70.5
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.7e-119 433.7 282 72.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.2e-119 433.3 355 63.7
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.2e-119 433.3 319 64.9
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.2e-119 433.3 248 77.0
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 3.7e-119 432.6 258 76.7
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 8.3e-119 431.4 294 69.4
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.4e-118 430.6 270 74.1
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.4e-118 430.6 299 69.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.2e-118 429.5 320 64.7
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 4.1e-118 429.1 285 70.5
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 7.1e-118 428.3 271 73.4
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 9.2e-118 427.9 275 71.3
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.2e-117 427.6 272 72.1
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.6e-117 427.2 257 76.3
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.1e-117 426.8 271 73.8
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.7e-117 426.4 297 69.4
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 2.7e-117 426.4 263 72.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 2.7e-117 426.4 265 74.0
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 7.8e-117 424.9 271 73.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 7.8e-117 424.9 274 71.9
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.8e-117 424.9 292 68.2
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.0e-116 424.5 247 76.5
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.0e-116 424.5 291 69.4
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.3e-116 424.1 292 68.2
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 5.1e-116 422.2 271 72.0
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 8.6e-116 421.4 257 76.3
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.3e-115 419.5 272 71.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 4.3e-115 419.1 263 71.1
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 7.3e-115 418.3 323 64.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 4.7e-114 415.6 258 73.3
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 6.2e-114 415.2 273 71.1
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.1e-114 414.8 302 64.9
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.1e-113 414.5 290 67.9
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.1e-113 414.5 277 69.0
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 5.2e-113 412.1 267 71.9
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.9e-113 411.4 285 69.1
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.2e-112 411.0 274 69.3
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.5e-112 410.6 272 70.2
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.6e-112 409.8 275 69.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 5.8e-112 408.7 323 63.2
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 7.6e-112 408.3 272 69.9
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.9e-111 406.4 301 65.1
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 2.9e-111 406.4 226 81.0
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 3.7e-111 406.0 240 77.5
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 4.9e-111 405.6 274 69.7
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.1e-110 404.4 296 67.6
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.9e-110 403.7 322 62.1
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.9e-110 403.7 246 75.6
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.4e-110 403.3 248 74.6
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.2e-110 402.9 249 74.3
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.3e-108 397.5 335 60.0
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 8.6e-108 394.8 291 64.9
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 6.2e-106 388.7 264 68.9
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 6.2e-106 388.7 369 53.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.0e-104 383.6 276 68.1
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 8.4e-103 378.3 289 64.0
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.1e-101 373.6 283 64.7
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.6e-101 372.5 315 59.0
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 6.4e-95 352.1 222 71.6
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.9e-94 350.5 197 76.1
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.3e-92 344.4 245 67.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 6.2e-90 335.5 308 55.5
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-89 334.0 311 55.6
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.1e-85 320.5 325 50.2
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 3.9e-84 316.2 314 53.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.4e-83 312.0 279 56.3
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.1e-82 310.5 316 54.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.7e-82 309.7 274 56.9
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 5.3e-81 305.8 189 74.1
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.5e-80 304.3 173 80.9
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.5e-80 304.3 173 80.9
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 6.5e-79 298.9 174 80.5
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.1e-78 298.1 274 57.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.6e-77 292.7 240 61.7
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 6.0e-77 292.4 173 77.5
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.8e-76 290.8 178 76.4
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.5e-75 287.7 205 69.8
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.3e-75 286.2 191 72.3
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 5.7e-67 259.2 332 44.6
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.6e-66 257.7 211 64.0
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.1e-65 253.4 295 46.4
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 3.4e-64 250.0 239 49.8
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.5e-62 243.8 191 61.3
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.2e-62 243.4 234 53.8
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.1e-57 226.5 202 58.9
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 7.9e-53 212.2 150 72.0
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.0e-52 211.8 147 70.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.8e-52 211.1 143 72.0
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.4e-49 201.4 278 42.8
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.2e-47 194.1 244 44.3
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 4.2e-46 189.9 239 46.0
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.1e-45 187.6 317 37.5
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.5e-43 181.4 226 45.1
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 2.2e-34 151.0 125 57.6
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 3.7e-34 150.2 124 58.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.7e-31 141.4 89 64.0
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.0e-24 117.9 75 66.7
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.4e-12 78.6 60 60.0
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.4e-09 67.8 55 52.7
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.4e-09 67.8 55 52.7
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 6.0e-08 63.2 225 25.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.9e-06 58.2 165 24.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 3.3e-06 57.4 193 27.5
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 7.3e-06 56.2 85 37.6


User provided reference genes

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