Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.7e-244 849.4 571 100.0
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.1e-74 284.3 446 42.6
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.2e-72 278.5 477 42.3
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.6e-72 277.3 454 42.7
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.7e-71 274.6 477 42.8
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.1e-70 271.9 495 41.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 2.4e-70 270.8 460 45.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 2.4e-70 270.8 445 43.1
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.4e-70 270.8 486 43.8
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.2e-70 270.4 467 46.7
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 4.1e-70 270.0 483 44.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 5.4e-70 269.6 481 41.2
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 9.2e-70 268.9 442 42.5
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.2e-69 268.5 499 40.7
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.2e-69 268.5 450 42.7
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 6.0e-69 266.2 491 42.6
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 7.8e-69 265.8 451 49.0
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 7.8e-69 265.8 440 42.5
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.0e-68 265.4 524 40.8
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.0e-68 265.4 481 42.0
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.7e-68 264.6 438 42.2
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 2.3e-68 264.2 440 47.3
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 5.1e-68 263.1 488 43.0
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.6e-68 262.7 480 41.7
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 6.6e-68 262.7 452 44.2
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.5e-67 261.5 420 45.7
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.3e-67 260.4 474 41.6
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 4.3e-67 260.0 492 44.5
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 9.5e-67 258.8 490 39.2
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 9.5e-67 258.8 490 39.2
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 9.5e-67 258.8 492 42.1
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 9.5e-67 258.8 432 44.7
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 1.2e-66 258.5 438 45.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.1e-66 257.7 443 42.4
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.6e-66 256.9 491 43.4
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.6e-66 256.9 478 38.7
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 3.6e-66 256.9 498 45.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 6.2e-66 256.1 475 42.1
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 6.2e-66 256.1 491 43.4
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.1e-65 255.4 487 45.0
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.0e-65 253.4 495 40.0
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.8e-65 252.7 491 43.4
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 6.8e-65 252.7 447 43.2
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.2e-64 251.9 450 43.6
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.2e-64 251.9 463 40.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.0e-64 251.1 449 45.4
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.6e-64 250.8 519 42.6
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 5.8e-64 249.6 454 42.1
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.8e-64 249.6 487 41.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 7.6e-64 249.2 479 39.9
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 7.6e-64 249.2 455 39.3
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.7e-63 248.1 496 40.1
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.7e-63 248.1 477 39.4
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.2e-63 247.7 505 37.0
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.2e-63 247.7 485 41.6
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 3.7e-63 246.9 495 44.2
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 4.9e-63 246.5 496 40.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 6.4e-63 246.1 479 40.9
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 6.4e-63 246.1 503 39.0
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 6.4e-63 246.1 456 39.7
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.1e-62 245.4 450 42.4
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-62 244.6 436 43.6
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.9e-62 244.6 450 43.6
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.9e-62 244.6 491 41.3
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.9e-62 244.6 474 40.5
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.9e-62 244.6 475 40.4
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.2e-62 243.8 466 39.7
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 3.2e-62 243.8 474 39.2
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 9.2e-62 242.3 446 39.7
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.1e-61 241.1 495 40.2
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.7e-61 240.7 493 41.6
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 4.6e-61 240.0 436 43.3
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 7.8e-61 239.2 495 41.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 7.8e-61 239.2 468 39.5
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 7.8e-61 239.2 483 40.0
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.3e-60 237.7 479 39.5
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.9e-60 236.9 454 39.0
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 5.1e-60 236.5 491 36.9
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 6.6e-60 236.1 518 38.2
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 6.6e-60 236.1 471 38.6
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.3e-59 233.4 437 42.3
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 7.3e-59 232.6 437 42.1
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.2e-58 231.9 493 41.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.6e-58 231.5 503 37.6
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.1e-58 231.1 413 42.6
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.7e-58 229.9 442 41.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 8.1e-58 229.2 469 39.2
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.1e-58 229.2 443 41.5
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.4e-57 228.4 493 42.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.8e-57 228.0 440 40.5
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 2.4e-57 227.6 476 39.5
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 6.8e-57 226.1 512 36.7
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.5e-56 224.9 512 40.8
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 3.4e-56 223.8 482 36.3
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 7.6e-56 222.6 442 40.0
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.9e-55 220.7 467 38.5
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.9e-55 220.7 455 38.2
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 3.8e-55 220.3 501 37.3
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.4e-54 217.6 453 37.3
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 5.4e-54 216.5 456 39.9
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 9.3e-54 215.7 484 34.9
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.6e-53 214.9 487 36.8
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 6.0e-53 213.0 446 41.5
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.8e-53 212.6 431 42.9
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 7.8e-53 212.6 500 37.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.3e-52 211.1 478 37.4
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.9e-52 210.3 312 48.4
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.1e-52 209.9 401 43.4
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.1e-51 208.8 404 42.8
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.5e-51 208.4 360 42.8
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 9.6e-51 205.7 441 39.0
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 4.0e-49 200.3 242 50.0
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.8e-48 196.4 457 35.0
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 9.9e-48 195.7 482 36.3
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 9.9e-48 195.7 468 36.8
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.3e-47 195.3 505 33.9
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.2e-47 194.5 584 30.0
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 8.4e-47 192.6 440 34.8
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.4e-46 191.8 375 42.4
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-43 182.2 465 37.2
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.8e-42 177.6 277 41.2
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.0e-40 171.4 474 35.0
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 3.4e-40 170.6 257 45.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.3e-39 168.7 481 32.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 3.8e-39 167.2 272 41.9
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 9.3e-38 162.5 514 32.9
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.5e-35 154.5 285 43.2
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.6e-35 153.3 471 35.0
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 4.8e-34 150.2 420 35.5
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.0e-31 142.5 289 39.1
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.9e-31 141.0 446 33.4
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.3e-28 131.3 294 36.7
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.2e-24 119.0 253 34.4
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.4e-19 99.8 75 65.3
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 7.4e-19 99.8 116 50.0
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 4.5e-16 90.5 404 30.4
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 4.5e-16 90.5 195 37.9
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.7e-15 88.6 69 65.2
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.2e-15 88.2 284 30.6
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.9e-15 87.8 73 56.2
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 7.2e-14 83.2 98 52.0
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 6.1e-13 80.1 57 66.7
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.8e-12 78.6 189 34.9
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.1e-11 75.9 68 51.5
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 2.2e-10 71.6 181 33.7
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 6.9e-09 66.6 196 34.2
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.0e-08 65.1 72 47.2
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.0e-07 62.8 195 33.3
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.7e-07 62.0 258 29.1
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.2e-07 61.6 113 38.1
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 7.2e-06 56.6 45 60.0


User provided reference genes

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