Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 9.0e-56 219.9 105 100.0
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.7e-25 118.2 72 83.3
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.0e-11 73.6 71 54.9
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.5e-10 67.4 67 52.2
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 7.5e-10 67.4 56 57.1
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.8e-10 67.0 79 46.8
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 9.8e-10 67.0 56 55.4
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 9.8e-10 67.0 56 55.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.3e-09 66.6 80 47.5
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.3e-09 66.6 71 49.3
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.7e-09 66.2 54 59.3
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.2e-09 65.9 73 52.1
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.8e-09 65.5 71 47.9
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.8e-09 65.5 79 46.8
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.8e-09 65.5 52 59.6
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.8e-09 65.5 54 57.4
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 3.7e-09 65.1 71 47.9
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 3.7e-09 65.1 55 60.0
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.7e-09 65.1 72 51.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.9e-09 64.7 53 62.3
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.9e-09 64.7 53 62.3
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 4.9e-09 64.7 79 48.1
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 6.3e-09 64.3 76 50.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 6.3e-09 64.3 67 49.3
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.3e-09 64.3 52 59.6
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 8.3e-09 63.9 55 60.0
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 8.3e-09 63.9 72 50.0
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.1e-08 63.5 66 51.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.4e-08 63.2 72 52.8
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.4e-08 63.2 79 45.6
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.4e-08 63.2 73 49.3
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.8e-08 62.8 74 50.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.8e-08 62.8 79 46.8
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.8e-08 62.8 52 59.6
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.8e-08 62.8 75 49.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.8e-08 62.8 70 50.0
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.4e-08 62.4 69 49.3
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.4e-08 62.4 69 49.3
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.1e-08 62.0 60 53.3
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.1e-08 62.0 46 63.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.1e-08 62.0 64 48.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.1e-08 62.0 62 50.0
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.1e-08 62.0 75 50.7
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.1e-08 61.6 81 44.4
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 4.1e-08 61.6 79 44.3
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 4.1e-08 61.6 72 48.6
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.1e-08 61.6 60 56.7
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 4.1e-08 61.6 72 50.0
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.4e-08 61.2 60 56.7
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.4e-08 61.2 60 56.7
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 5.4e-08 61.2 75 46.7
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 7.0e-08 60.8 58 55.2
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 7.0e-08 60.8 73 50.7
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 7.0e-08 60.8 73 47.9
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.0e-08 60.8 58 53.4
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 7.0e-08 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 9.2e-08 60.5 70 48.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 9.2e-08 60.5 70 48.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 9.2e-08 60.5 74 47.3
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 9.2e-08 60.5 74 47.3
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.2e-07 60.1 38 71.1
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.2e-07 60.1 75 48.0
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.2e-07 60.1 55 54.5
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.6e-07 59.7 52 57.7
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.6e-07 59.7 72 48.6
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.0e-07 59.3 73 50.7
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.0e-07 59.3 53 58.5
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.0e-07 59.3 63 50.8
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.7e-07 58.9 71 47.9
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.7e-07 58.9 38 68.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.7e-07 58.9 76 44.7
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.5e-07 58.5 57 49.1
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.5e-07 58.5 51 56.9
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.5e-07 58.5 54 55.6
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 5.9e-07 57.8 52 51.9
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 7.7e-07 57.4 33 75.8
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 7.7e-07 57.4 33 75.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 7.7e-07 57.4 53 54.7
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 7.7e-07 57.4 58 51.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.7e-07 57.4 69 49.3
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 7.7e-07 57.4 74 45.9
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.0e-06 57.0 33 78.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.0e-06 57.0 33 78.8
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.0e-06 57.0 33 78.8
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.0e-06 57.0 33 78.8
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.0e-06 57.0 33 78.8
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.0e-06 57.0 38 68.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.0e-06 57.0 38 68.4
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.0e-06 57.0 81 40.7
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.3e-06 56.6 33 75.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.3e-06 56.6 33 75.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.3e-06 56.6 71 45.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-06 56.2 78 43.6
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.7e-06 56.2 59 49.2
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.7e-06 56.2 71 47.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.7e-06 56.2 71 47.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.7e-06 56.2 71 47.9
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.7e-06 56.2 56 51.8
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.3e-06 55.8 65 46.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.9e-06 55.5 38 65.8
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.9e-06 55.5 38 65.8
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.9e-06 55.5 79 44.3
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.8e-06 55.1 33 75.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.8e-06 55.1 53 50.9
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.8e-06 55.1 78 44.9
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.8e-06 55.1 73 45.2
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.8e-06 55.1 73 45.2
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.0e-06 54.7 59 54.2
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.0e-06 54.7 63 47.6
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 6.6e-06 54.3 31 77.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 6.6e-06 54.3 33 72.7
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 6.6e-06 54.3 79 46.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 8.6e-06 53.9 65 46.2
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 8.6e-06 53.9 66 48.5


User provided reference genes

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