Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 8.9e-128 460.3 236 100.0
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 3.9e-67 258.8 233 57.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-66 256.1 228 57.5
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 4.4e-66 255.4 232 56.9
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 4.4e-66 255.4 231 56.3
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 5.7e-66 255.0 234 57.7
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.1e-64 250.8 224 58.9
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 2.4e-64 249.6 215 59.1
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 2.4e-64 249.6 234 56.8
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.4e-64 249.6 228 55.7
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 4.1e-64 248.8 239 54.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 4.1e-64 248.8 236 55.5
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.1e-64 248.8 232 58.6
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 7.0e-64 248.1 231 58.9
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 7.0e-64 248.1 237 55.3
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 7.0e-64 248.1 228 55.3
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.2e-63 247.3 231 55.4
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.0e-63 246.5 234 55.6
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.0e-63 246.5 226 56.2
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.6e-63 246.1 238 55.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 4.5e-63 245.4 230 56.5
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 5.9e-63 245.0 226 55.3
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.9e-62 242.7 225 55.1
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 3.8e-62 242.3 236 53.4
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 3.8e-62 242.3 230 55.7
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 3.8e-62 242.3 231 55.0
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 5.0e-62 241.9 237 55.7
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 8.5e-62 241.1 228 54.8
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 8.5e-62 241.1 232 55.2
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.1e-61 240.7 232 54.7
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 1.1e-61 240.7 226 54.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.9e-61 240.0 228 57.9
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.5e-61 239.6 213 58.2
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.5e-61 239.6 234 56.8
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 3.2e-61 239.2 228 53.1
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.2e-61 238.8 230 54.8
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 9.4e-61 237.7 232 54.7
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.2e-60 237.3 229 54.1
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.6e-60 236.9 234 53.8
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.1e-60 236.5 230 53.9
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 2.1e-60 236.5 235 54.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.1e-60 236.5 233 53.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 3.6e-60 235.7 218 55.0
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 4.7e-60 235.3 228 54.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.7e-60 235.3 228 52.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 6.1e-60 235.0 233 53.2
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 6.1e-60 235.0 226 54.4
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 8.0e-60 234.6 234 55.1
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.4e-59 233.8 221 54.3
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 4.0e-59 232.3 227 52.9
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 5.2e-59 231.9 236 53.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.2e-59 231.9 226 54.0
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 8.8e-59 231.1 235 54.5
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.8e-59 231.1 227 55.1
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.8e-59 231.1 227 55.1
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.5e-58 230.3 215 53.5
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.0e-58 229.9 216 52.3
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 3.3e-58 229.2 234 52.1
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 2.2e-57 226.5 213 56.8
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 2.8e-57 226.1 234 51.7
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 6.3e-57 224.9 235 49.8
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.2e-57 224.6 229 52.4
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.1e-56 224.2 216 52.8
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.4e-56 223.8 238 50.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.4e-56 223.0 229 52.4
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.4e-56 223.0 229 52.4
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 3.1e-56 222.6 219 53.0
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 4.1e-56 222.2 230 53.5
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 4.1e-56 222.2 220 52.7
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 4.1e-56 222.2 242 50.4
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 4.1e-56 222.2 224 51.8
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 5.3e-56 221.9 226 52.2
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 5.3e-56 221.9 223 52.5
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 7.0e-56 221.5 231 51.1
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 7.0e-56 221.5 212 53.8
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.6e-55 219.5 229 52.4
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 3.5e-55 219.2 239 52.3
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 7.7e-55 218.0 231 51.5
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.8e-54 215.7 219 53.4
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 5.0e-54 215.3 227 52.4
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 6.5e-54 214.9 246 49.2
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 8.5e-54 214.5 231 54.1
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 5.5e-53 211.8 234 50.4
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 7.2e-53 211.5 216 51.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 9.4e-53 211.1 220 51.8
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 9.4e-53 211.1 232 47.8
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 4.7e-52 208.8 235 50.2
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 4.7e-52 208.8 238 48.7
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 8.0e-52 208.0 234 50.0
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 3.0e-51 206.1 239 49.0
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.6e-50 203.0 231 48.5
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 7.5e-50 201.4 238 47.1
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 7.5e-50 201.4 233 48.1
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.8e-49 199.5 217 50.2
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.7e-49 199.1 179 54.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 2.4e-48 196.4 241 46.5
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 4.1e-48 195.7 281 41.3
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.0e-46 191.0 220 49.1
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 3.2e-45 186.0 266 41.0
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 3.2e-45 186.0 234 44.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 4.2e-45 185.7 255 44.7
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.6e-44 183.7 230 43.9
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.7e-44 182.2 222 46.8
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 3.0e-43 179.5 282 41.5
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.3e-41 174.1 161 54.0
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.7e-41 173.7 230 45.7
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.4e-40 169.9 234 43.2
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.3e-38 164.1 162 51.2
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.3e-38 163.3 160 55.0
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.9e-38 162.9 233 39.9
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 5.0e-38 162.2 226 42.0
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.9e-37 160.2 165 52.1
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 9.5e-37 157.9 233 41.2
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 6.1e-36 155.2 137 53.3
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 4.0e-35 152.5 128 60.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 7.5e-34 148.3 240 40.0
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.0e-30 137.9 82 72.0
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.3e-29 132.9 184 41.3
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 4.0e-27 125.9 140 47.1
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 5.8e-26 122.1 95 57.9
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.7e-25 119.4 238 33.2
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 4.9e-25 119.0 87 60.9
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 5.0e-22 109.0 126 44.4
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 6.6e-22 108.6 171 40.9
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 2.9e-17 93.2 134 44.0
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.4e-16 90.9 141 41.1
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 4.6e-15 85.9 167 32.3
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.1e-14 82.4 112 39.3
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 6.6e-14 82.0 187 31.0
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.3e-13 79.7 102 46.1
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.3e-13 78.6 135 37.0
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 2.8e-12 76.6 83 55.4
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.3e-11 73.6 100 42.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.0e-10 70.5 53 60.4
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.4e-08 64.3 106 37.7
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 5.1e-06 55.8 80 42.5


User provided reference genes

Program Settings