Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1677.1 834 100.0
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1399.0 826 84.6
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1397.9 796 86.3
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1390.9 830 83.5
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1380.2 837 82.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1374.8 828 82.4
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 828 82.1
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 820 81.7
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1327.0 822 80.4
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 819 80.5
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 819 81.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 822 80.3
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 831 79.3
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 816 79.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 816 78.9
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 822 79.8
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 793 82.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 822 79.7
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 775 83.5
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 779 83.3
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 819 79.7
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 833 79.4
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 822 79.3
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 821 79.4
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 793 81.7
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 784 82.3
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 822 79.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 823 79.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 823 79.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 827 78.2
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 779 82.9
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 786 81.6
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 785 82.0
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 819 79.2
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 786 81.7
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 820 79.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 820 78.4
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 829 78.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 836 78.0
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 820 78.4
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 793 80.7
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 807 79.2
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 811 79.5
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 821 78.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 791 80.5
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 829 77.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 823 78.1
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 828 78.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 821 78.3
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 850 76.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 794 80.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 793 79.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 809 78.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 812 78.3
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 793 80.5
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 820 78.3
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 827 77.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 820 77.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 826 77.8
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 823 78.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 823 77.8
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 872 75.1
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 820 78.8
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 776 82.5
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 823 77.6
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 823 77.8
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 822 77.5
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 825 77.7
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 817 78.1
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 818 77.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 825 77.7
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 807 78.4
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 792 78.7
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 820 77.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 856 74.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 855 71.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 800 79.2
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 789 80.2
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 819 77.7
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 825 76.5
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 825 77.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 820 77.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 807 77.6
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 809 77.3
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 772 80.1
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 859 73.6
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 788 79.1
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 834 75.9
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 809 77.3
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 812 77.7
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 798 77.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1242.3 818 76.5
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 816 77.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 816 77.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 816 77.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 824 76.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1239.2 807 78.9
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1238.0 813 77.0
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 816 75.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 785 78.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 827 76.7
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 783 79.2
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 818 75.8
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 832 75.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 822 76.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 823 75.2
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 830 74.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1231.9 821 76.7
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 823 76.2
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 823 76.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 823 75.0
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 822 75.2
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 822 75.2
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 822 75.2
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 822 75.2
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 822 74.9
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1218.8 821 75.3
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 854 73.7
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1198.0 822 74.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1196.0 834 73.4
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1194.1 752 80.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 822 70.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1187.9 784 75.9
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1186.8 865 70.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1185.2 864 71.3
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1184.9 823 73.0
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1183.3 820 74.0
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1182.2 778 77.4
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1180.2 818 74.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1178.3 811 74.1
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1176.0 826 72.6
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1170.2 698 82.5
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1167.5 793 74.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1161.4 755 78.0
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1160.2 825 71.4
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1151.0 882 68.3
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 759 75.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1137.1 820 72.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1120.9 818 71.8
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1104.4 734 77.8
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1077.4 763 70.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.5e-294 1016.1 810 67.3
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-283 979.2 817 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 8.8e-279 963.8 645 72.4
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 5.9e-275 951.0 572 80.2
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.7e-253 878.6 582 73.0
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 4.5e-251 871.7 483 85.9
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.5e-249 865.9 542 81.0
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.1e-183 646.0 709 53.0
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.7e-149 534.3 451 59.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.5e-134 483.0 364 74.5
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.4e-127 459.5 308 72.1
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-106 392.1 318 68.9
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.1e-103 379.4 397 55.2
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.2e-103 379.0 582 47.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 7.1e-95 352.8 272 65.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.1e-60 239.2 156 77.6
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 3.8e-48 197.6 134 67.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.6e-46 192.2 165 59.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 6.1e-38 163.7 479 29.9
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.9e-33 147.1 458 29.5
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.0e-29 136.3 76 82.9
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.8e-29 133.7 474 25.9
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.8e-27 128.3 473 27.3
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 4.8e-27 127.5 442 27.4
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.1e-26 124.8 63 92.1
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-25 122.5 96 66.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.4e-21 109.4 65 73.8
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.5e-17 94.4 98 48.0
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-16 92.8 220 32.7
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-16 91.3 266 27.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 3.4e-12 78.2 85 44.7
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 3.7e-11 74.7 138 34.1
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-08 65.9 88 39.8
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.1e-07 63.2 42 71.4


User provided reference genes

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