Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 3.4e-175 618.2 316 100.0
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.1e-63 246.9 241 49.8
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.3e-62 243.4 236 50.8
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.7e-62 241.9 248 50.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.5e-61 240.0 237 50.6
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.3e-61 239.2 237 50.2
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 5.7e-61 238.8 263 48.3
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.1e-60 236.9 239 52.7
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.8e-60 236.5 242 48.8
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.7e-60 236.1 238 49.2
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.1e-59 234.6 239 47.7
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.1e-59 234.6 237 50.6
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.8e-59 233.8 235 50.6
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.4e-59 233.4 235 50.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 6.9e-59 231.9 237 49.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.6e-58 229.9 240 45.8
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.4e-58 229.6 240 48.8
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.4e-58 229.6 237 48.1
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 5.8e-58 228.8 236 51.7
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 5.8e-58 228.8 236 50.4
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.7e-57 227.3 246 45.9
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.2e-57 226.9 241 49.0
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 6.5e-57 225.3 234 47.4
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.4e-56 224.2 241 49.0
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.9e-56 223.8 235 45.5
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.2e-56 223.0 235 48.1
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.2e-56 223.0 235 50.2
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.5e-56 222.2 241 48.5
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.1e-56 221.9 237 48.1
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.2e-55 221.1 242 47.9
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.7e-55 219.9 233 50.2
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.7e-55 219.9 235 50.6
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 4.6e-55 219.2 235 49.8
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.3e-54 216.9 236 46.2
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.3e-54 216.9 237 48.1
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 3.0e-54 216.5 233 47.2
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.7e-54 215.3 236 46.6
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.5e-53 214.2 238 46.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.9e-53 213.8 222 49.1
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 4.3e-53 212.6 235 46.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 5.7e-53 212.2 236 47.5
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.7e-53 212.2 235 45.1
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.3e-52 211.1 244 46.7
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.2e-52 210.3 240 45.8
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.2e-52 210.3 252 44.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 3.7e-52 209.5 191 54.5
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 4.8e-52 209.1 245 43.3
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 8.2e-52 208.4 241 45.6
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 8.2e-52 208.4 275 43.6
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.1e-51 208.0 256 45.3
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.4e-51 207.6 236 44.5
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.8e-51 207.2 240 43.3
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.4e-51 206.8 241 45.2
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 5.3e-51 205.7 241 44.8
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 5.3e-51 205.7 246 43.5
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 5.3e-51 205.7 236 46.2
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 6.9e-51 205.3 256 43.8
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 9.0e-51 204.9 236 48.3
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 9.0e-51 204.9 235 45.1
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 9.0e-51 204.9 242 44.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.2e-50 204.5 236 47.0
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.6e-50 203.4 241 44.4
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.6e-50 203.4 246 44.3
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 7.7e-50 201.8 246 43.5
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 7.7e-50 201.8 264 43.6
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.7e-50 201.8 212 49.1
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.7e-50 201.8 212 49.1
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.3e-49 201.1 238 43.3
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.3e-49 201.1 236 46.2
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.7e-49 200.7 241 44.0
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 2.2e-49 200.3 240 44.2
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.2e-49 200.3 242 44.6
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 2.9e-49 199.9 245 42.9
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.8e-49 199.5 241 44.4
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.8e-49 199.5 235 43.8
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 8.5e-49 198.4 253 44.3
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 8.5e-49 198.4 209 46.9
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 8.5e-49 198.4 236 45.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 8.5e-49 198.4 236 45.3
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.1e-48 198.0 253 41.5
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.4e-48 197.6 207 48.3
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.9e-48 197.2 233 43.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.5e-48 196.8 235 47.2
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.5e-48 196.8 236 45.3
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 4.2e-48 196.1 241 44.4
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 9.4e-48 194.9 242 41.7
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-47 194.5 234 45.7
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.6e-47 194.1 238 45.0
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.6e-47 194.1 236 45.8
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.7e-47 193.4 236 44.5
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.3e-46 190.3 238 42.9
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 6.7e-46 188.7 207 47.8
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 8.8e-46 188.3 196 49.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.1e-45 188.0 246 42.7
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-45 188.0 242 44.2
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.5e-45 187.6 240 44.2
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 4.3e-45 186.0 240 43.3
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 5.7e-45 185.7 236 45.8
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 5.7e-45 185.7 238 41.6
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 5.7e-45 185.7 252 41.7
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 9.7e-45 184.9 236 45.3
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 9.7e-45 184.9 241 43.6
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.3e-44 184.5 256 40.6
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.3e-44 184.5 236 42.8
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 2.2e-44 183.7 237 42.6
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 3.7e-44 183.0 238 42.4
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 6.3e-44 182.2 236 44.1
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 6.3e-44 182.2 236 41.9
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.2e-44 181.8 217 46.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.1e-43 181.4 237 42.2
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.1e-43 181.4 183 52.5
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-43 181.0 237 42.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.4e-43 180.3 220 45.5
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.1e-43 179.9 235 42.6
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.1e-43 179.9 236 43.2
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.1e-43 179.5 224 45.1
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.3e-43 179.1 235 42.1
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 9.1e-43 178.3 240 43.8
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 9.1e-43 178.3 235 42.1
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.6e-42 176.8 204 48.5
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 7.7e-42 175.3 194 47.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 7.7e-42 175.3 194 47.9
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.0e-41 174.9 250 42.8
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.4e-40 171.0 208 44.2
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.2e-39 167.9 241 41.9
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.2e-39 167.9 241 41.9
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.6e-39 167.5 208 42.8
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.1e-39 167.2 165 52.1
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 6.7e-38 162.2 242 38.8
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 8.8e-38 161.8 251 42.6
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.3e-36 155.6 209 43.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 7.7e-34 148.7 215 36.7
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.1e-31 140.6 214 39.3
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 2.3e-30 137.1 274 32.8
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.7e-28 129.8 173 44.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.8e-27 127.5 237 36.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 7.2e-24 115.5 149 47.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 2.1e-23 114.0 101 54.5
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.8e-22 110.9 168 39.9
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.5e-21 107.8 237 32.1
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 3.7e-20 103.2 100 52.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.1e-19 100.1 91 56.0
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.0e-18 97.4 251 29.1
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.5e-18 96.3 86 55.8
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.0e-17 95.1 104 43.3
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 3.8e-17 93.2 142 41.5
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 2.7e-15 87.0 143 37.1
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.4e-14 84.7 233 29.2
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 4.5e-10 69.7 110 35.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.7e-09 67.8 69 44.9


User provided reference genes

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