Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.5e-97 357.8 171 100.0
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 6.0e-65 251.1 151 81.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 8.7e-24 114.4 153 45.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.5e-19 98.2 154 41.6
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 5.5e-18 95.1 153 42.5
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.2e-17 94.0 155 39.4
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.6e-17 93.6 147 38.8
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.9e-16 89.0 116 47.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 3.9e-16 89.0 116 47.4
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 6.7e-16 88.2 148 39.2
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.7e-16 88.2 152 38.8
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.1e-15 87.4 139 42.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.9e-15 86.7 158 34.2
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.3e-15 85.9 148 39.9
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.8e-14 82.0 154 35.7
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 4.8e-14 82.0 154 35.7
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 4.8e-14 82.0 117 42.7
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.8e-14 82.0 102 42.2
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 8.2e-14 81.3 118 39.0
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.1e-13 80.9 156 38.5
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.4e-13 80.5 149 35.6
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.8e-13 80.1 148 38.5
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.8e-13 80.1 103 43.7
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.8e-13 80.1 150 34.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.4e-13 79.7 112 41.1
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.1e-13 79.3 105 44.8
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.1e-13 79.3 102 44.1
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 3.1e-13 79.3 112 44.6
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.1e-13 79.0 158 34.2
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 5.3e-13 78.6 149 38.3
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 6.9e-13 78.2 109 45.9
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 6.9e-13 78.2 109 40.4
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 6.9e-13 78.2 112 41.1
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 9.0e-13 77.8 149 32.9
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 9.0e-13 77.8 148 33.1
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.2e-12 77.4 105 42.9
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.2e-12 77.4 105 43.8
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-12 77.4 112 42.0
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-12 77.4 112 42.0
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.5e-12 77.0 104 44.2
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-12 77.0 112 40.2
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.0e-12 76.6 105 41.9
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.0e-12 76.6 91 46.2
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.0e-12 76.6 91 46.2
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 2.6e-12 76.3 146 36.3
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 2.6e-12 76.3 161 31.1
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 3.4e-12 75.9 107 42.1
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.4e-12 75.9 112 41.1
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 4.5e-12 75.5 120 38.3
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 4.5e-12 75.5 101 42.6
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 7.6e-12 74.7 149 34.9
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 7.6e-12 74.7 112 37.5
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.0e-11 74.3 109 42.2
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.3e-11 73.9 141 36.9
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.3e-11 73.9 151 31.8
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.7e-11 73.6 115 34.8
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.7e-11 73.6 118 37.3
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.7e-11 73.6 108 41.7
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.8e-11 72.4 112 40.2
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 5.0e-11 72.0 106 39.6
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 5.0e-11 72.0 115 33.9
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 6.5e-11 71.6 146 30.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 6.5e-11 71.6 118 37.3
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 8.4e-11 71.2 137 35.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 8.4e-11 71.2 149 31.5
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.1e-10 70.9 105 39.0
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.9e-10 70.1 139 32.4
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.5e-10 69.7 104 38.5
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.5e-10 69.7 113 39.8
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-10 69.3 122 35.2
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.2e-10 69.3 110 43.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.2e-10 68.9 149 32.9
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 4.2e-10 68.9 105 39.0
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 4.2e-10 68.9 105 39.0
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 5.5e-10 68.6 105 36.2
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 5.5e-10 68.6 105 39.0
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 5.5e-10 68.6 103 41.7
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 7.1e-10 68.2 150 34.0
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 7.1e-10 68.2 105 38.1
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 9.3e-10 67.8 105 39.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-09 67.4 123 35.0
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.2e-09 67.4 106 40.6
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.1e-09 66.6 105 38.1
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 4.6e-09 65.5 107 38.3
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 6.1e-09 65.1 123 34.1
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 6.1e-09 65.1 67 53.7
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.0e-08 64.3 105 38.1
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-08 64.3 123 34.1
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-08 63.9 156 31.4
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.3e-08 63.9 111 38.7
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 2.3e-08 63.2 118 33.1
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.3e-08 63.2 96 40.6
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.0e-08 62.8 155 29.0
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 3.0e-08 62.8 80 40.0
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.1e-08 62.0 102 37.3
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 6.7e-08 61.6 106 40.6
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.5e-07 60.5 103 35.0
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.5e-07 60.5 104 42.3
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.9e-07 60.1 83 44.6
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 2.5e-07 59.7 93 39.8
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.3e-07 59.3 104 36.5
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.3e-07 58.9 69 44.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 4.3e-07 58.9 153 30.1
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 7.4e-07 58.2 160 28.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 7.4e-07 58.2 103 35.9
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 7.4e-07 58.2 151 28.5
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 7.4e-07 58.2 67 41.8
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 9.7e-07 57.8 149 29.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 9.7e-07 57.8 107 32.7
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 1.3e-06 57.4 52 55.8
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-06 57.0 69 43.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.8e-06 56.2 152 26.3
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.8e-06 56.2 126 30.2
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.8e-06 55.5 66 42.4
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.8e-06 55.5 154 27.9
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.8e-06 55.5 92 33.7
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 6.3e-06 55.1 129 31.0
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 6.3e-06 55.1 74 39.2


User provided reference genes

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