Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G210 Amborella trichopoda HOM05D022024 ORTHO05D009245 3.9e-48 194.5 100 100.0
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 3.4e-12 75.1 79 53.2
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 5.5e-10 67.8 88 42.0
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 1.6e-09 66.2 68 51.5
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 2.7e-09 65.5 89 49.4
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 4.6e-09 64.7 76 47.4
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 4.6e-09 64.7 79 50.6
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 7.9e-09 63.9 82 43.9
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 1.8e-08 62.8 53 56.6
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 1.8e-08 62.8 70 45.7
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 3.9e-08 61.6 68 50.0
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 5.1e-08 61.2 83 48.2
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 5.1e-08 61.2 46 56.5
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 8.7e-08 60.5 93 45.2
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 1.1e-07 60.1 75 49.3
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 1.5e-07 59.7 82 40.2
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 1.5e-07 59.7 52 55.8
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 1.9e-07 59.3 58 51.7
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 2.5e-07 58.9 83 43.4
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 4.3e-07 58.2 93 44.1
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 4.3e-07 58.2 83 44.6
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 5.7e-07 57.8 51 52.9
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 5.7e-07 57.8 71 47.9
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 9.6e-07 57.0 50 52.0
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 9.6e-07 57.0 49 53.1
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.3e-06 56.6 63 46.0
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.3e-06 56.6 73 45.2
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.3e-06 56.6 63 46.0
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 1.3e-06 56.6 73 39.7
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 1.6e-06 56.2 76 40.8
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.1e-06 55.8 58 50.0
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.1e-06 55.8 58 50.0
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.1e-06 55.8 58 50.0
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 2.1e-06 55.8 82 42.7
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 2.1e-06 55.8 51 52.9
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 2.1e-06 55.8 82 43.9
Zm00001eb252230 Zea mays HOM05D022024 ORTHO05D030312 2.1e-06 55.8 94 38.3
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 2.8e-06 55.5 67 49.3
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 2.8e-06 55.5 60 50.0
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 2.8e-06 55.5 54 51.9
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 3.7e-06 55.1 59 50.8
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 3.7e-06 55.1 48 54.2
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 4.8e-06 54.7 106 35.8
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 6.2e-06 54.3 51 49.0
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 6.2e-06 54.3 80 41.2
Os02g0708000 Oryza sativa ssp. japonica HOM05D022024 ORTHO05D030312 6.2e-06 54.3 95 41.1
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 6.2e-06 54.3 59 52.5
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 6.2e-06 54.3 51 51.0
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 6.2e-06 54.3 70 44.3
Zm00001eb188510 Zea mays HOM05D022024 ORTHO05D030312 6.2e-06 54.3 64 45.3
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 8.2e-06 53.9 58 48.3
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 8.2e-06 53.9 84 41.7
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 8.2e-06 53.9 54 57.4
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 8.2e-06 53.9 74 47.3


User provided reference genes

Program Settings