Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 5.7e-101 370.9 189 100.0
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.6e-63 245.4 184 70.1
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.1e-62 243.8 182 69.2
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 1.8e-62 243.0 178 71.3
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.4e-61 238.4 180 69.4
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.5e-61 237.7 182 70.3
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 8.3e-60 234.2 179 70.4
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.4e-59 232.6 179 67.0
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 4.1e-59 231.9 180 69.4
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.1e-59 231.9 184 69.0
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.0e-58 228.0 179 69.3
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 7.8e-58 227.6 180 67.2
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.0e-57 227.3 179 69.3
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.0e-57 227.3 179 68.7
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 5.1e-57 224.9 184 67.9
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 8.6e-57 224.2 179 67.0
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 8.6e-57 224.2 155 74.2
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.5e-56 223.4 187 65.8
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.5e-56 222.6 180 66.7
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.5e-56 222.6 180 65.0
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 3.3e-56 222.2 180 67.2
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.3e-56 222.2 155 75.5
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.3e-56 221.9 180 65.0
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.3e-56 221.9 180 65.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.3e-56 221.9 180 66.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 5.6e-56 221.5 180 66.7
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 7.3e-56 221.1 179 65.9
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 7.3e-56 221.1 180 69.4
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 9.5e-56 220.7 184 62.5
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 9.5e-56 220.7 179 67.0
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.2e-55 220.3 179 65.9
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.2e-55 220.3 180 66.1
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.6e-55 219.9 179 67.0
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.6e-55 219.9 182 66.5
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.1e-55 219.5 151 76.8
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.6e-55 218.8 179 67.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 3.6e-55 218.8 155 72.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 3.6e-55 218.8 180 66.1
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 4.7e-55 218.4 182 65.4
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 6.2e-55 218.0 156 75.6
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.2e-55 218.0 179 66.5
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.1e-55 217.6 181 65.7
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.1e-54 217.2 181 67.4
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.4e-54 216.9 179 66.5
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.8e-54 216.5 156 75.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.8e-54 216.5 177 66.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.8e-54 216.5 182 63.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.3e-54 216.1 184 64.1
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.3e-54 216.1 179 65.9
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 3.1e-54 215.7 181 65.7
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 3.1e-54 215.7 181 65.2
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.1e-54 215.7 179 67.0
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.1e-54 215.7 178 65.7
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 5.2e-54 214.9 155 73.5
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 5.2e-54 214.9 177 66.7
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 5.2e-54 214.9 180 67.2
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 8.9e-54 214.2 179 66.5
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 8.9e-54 214.2 154 76.0
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.2e-53 213.8 168 65.5
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.6e-53 212.6 179 64.2
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 2.6e-53 212.6 179 65.4
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.4e-53 212.2 181 63.5
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 4.4e-53 211.8 181 64.1
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.8e-53 211.5 172 68.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 5.8e-53 211.5 181 63.5
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 5.8e-53 211.5 180 64.4
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.3e-52 210.3 179 64.2
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.3e-52 210.3 180 64.4
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.3e-52 210.3 179 65.4
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.7e-52 209.9 186 59.7
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.9e-52 209.1 185 61.1
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 3.7e-52 208.8 180 62.8
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 3.7e-52 208.8 155 72.9
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.9e-52 208.4 180 63.9
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 4.9e-52 208.4 194 59.8
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 6.4e-52 208.0 156 70.5
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.4e-52 208.0 180 63.9
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 6.4e-52 208.0 180 63.9
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 6.4e-52 208.0 155 69.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 6.4e-52 208.0 179 64.8
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.3e-52 207.6 173 65.3
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 8.3e-52 207.6 162 69.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.9e-51 206.5 152 72.4
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.9e-51 206.5 175 64.0
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 4.1e-51 205.3 155 69.0
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 9.2e-51 204.1 156 71.2
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 3.5e-50 202.2 155 70.3
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 4.6e-50 201.8 155 69.7
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.6e-50 201.8 163 65.6
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 6.0e-50 201.4 164 66.5
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 7.8e-50 201.1 152 70.4
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 7.8e-50 201.1 183 60.7
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 7.8e-50 201.1 174 63.2
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 7.8e-50 201.1 176 62.5
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.0e-49 200.7 176 61.4
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-49 200.3 152 69.7
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-49 200.3 152 70.4
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.3e-49 200.3 180 60.0
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.7e-49 199.9 152 70.4
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 3.0e-49 199.1 152 70.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 3.0e-49 199.1 152 70.4
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.0e-49 199.1 176 60.8
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 6.6e-49 198.0 152 69.7
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 6.6e-49 198.0 152 69.7
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 6.6e-49 198.0 152 69.7
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 6.6e-49 198.0 152 68.4
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 6.6e-49 198.0 154 68.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-48 197.2 181 58.6
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.5e-48 196.8 152 67.8
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 2.5e-48 196.1 165 64.8
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-48 196.1 149 71.1
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.3e-48 195.7 179 60.9
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 4.3e-48 195.3 152 67.8
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.3e-48 195.3 173 61.8
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 9.5e-48 194.1 152 67.8
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.6e-47 193.4 154 66.2
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 3.6e-47 192.2 164 64.6
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 8.1e-47 191.0 154 65.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.8e-46 189.9 150 65.3
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 5.2e-46 188.3 183 59.0
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 5.2e-46 188.3 183 59.0
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 6.8e-46 188.0 159 60.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.5e-45 186.8 152 66.4
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.4e-45 185.3 135 71.1
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.3e-44 183.7 145 69.0
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-43 180.6 149 63.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 2.4e-43 179.5 147 69.4
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.2e-42 177.2 171 59.6
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 3.0e-41 172.6 126 72.2
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.9e-41 172.2 168 59.5
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 8.7e-41 171.0 177 53.7
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.5e-40 169.5 177 53.7
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 2.1e-39 166.4 174 52.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.4e-37 158.7 175 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.7e-36 156.8 130 61.5
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 2.9e-36 156.0 132 63.6
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.8e-36 155.6 154 55.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.8e-36 155.6 154 55.2
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.8e-36 155.6 133 63.2
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.4e-36 154.5 151 57.0
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 5.4e-35 151.8 99 78.8
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.0e-33 146.0 156 54.5
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.0e-33 146.0 156 54.5
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.3e-32 141.4 173 49.1
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 9.6e-32 141.0 110 69.1
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.6e-31 140.2 112 62.5
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 4.8e-31 138.7 127 59.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.8e-22 110.2 79 72.2
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.0e-21 106.7 67 79.1
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.0e-17 92.8 103 51.5
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 3.3e-16 89.4 64 71.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.3e-16 89.0 63 66.7
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 9.6e-16 87.8 96 55.2
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 9.6e-16 87.8 96 55.2
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.2e-13 80.9 94 45.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 3.4e-13 79.3 97 39.2
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 2.9e-12 76.3 105 38.1


User provided reference genes

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