Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 2.3e-66 255.4 125 100.0
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 1.6e-11 73.2 98 44.9
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 1.6e-11 73.2 117 44.4
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 4.7e-11 71.6 123 41.5
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 8.1e-11 70.9 81 44.4
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.1e-10 70.5 133 38.3
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 2.3e-10 69.3 100 40.0
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.3e-10 69.3 111 39.6
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 3.1e-10 68.9 101 41.6
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.1e-10 68.9 80 45.0
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 4.0e-10 68.6 83 42.2
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 5.2e-10 68.2 134 35.8
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.2e-10 68.2 79 41.8
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 5.2e-10 68.2 81 43.2
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 5.2e-10 68.2 81 43.2
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-09 67.0 84 40.5
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.5e-09 66.6 80 43.8
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.0e-09 66.2 125 32.8
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 2.6e-09 65.9 127 35.4
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 2.6e-09 65.9 88 39.8
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 3.4e-09 65.5 114 31.6
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 3.4e-09 65.5 82 41.5
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 4.4e-09 65.1 81 38.3
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.4e-09 65.1 117 31.6
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.4e-09 65.1 70 44.3
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 5.8e-09 64.7 90 42.2
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 5.8e-09 64.7 84 42.9
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 7.5e-09 64.3 57 49.1
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 7.5e-09 64.3 110 36.4
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.5e-09 64.3 79 40.5
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 7.5e-09 64.3 66 43.9
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 7.5e-09 64.3 66 43.9
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.5e-09 64.3 77 44.2
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 9.9e-09 63.9 123 36.6
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.3e-08 63.5 76 42.1
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.3e-08 63.5 83 36.1
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.7e-08 63.2 82 40.2
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.7e-08 63.2 113 38.1
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.7e-08 63.2 126 30.2
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 2.2e-08 62.8 79 41.8
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.2e-08 62.8 85 37.6
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 2.2e-08 62.8 80 37.5
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 2.9e-08 62.4 86 39.5
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 2.9e-08 62.4 67 43.3
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 3.7e-08 62.0 83 38.6
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 3.7e-08 62.0 83 38.6
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 3.7e-08 62.0 89 36.0
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.7e-08 62.0 80 38.8
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.7e-08 62.0 100 36.0
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.7e-08 62.0 100 36.0
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 3.7e-08 62.0 81 44.4
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 3.7e-08 62.0 98 33.7
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.7e-08 62.0 132 30.3
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 3.7e-08 62.0 125 36.0
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 3.7e-08 62.0 101 34.7
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 4.9e-08 61.6 83 38.6
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 4.9e-08 61.6 80 38.8
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 4.9e-08 61.6 109 39.4
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 4.9e-08 61.6 80 40.0
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 6.4e-08 61.2 83 38.6
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 6.4e-08 61.2 83 38.6
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 6.4e-08 61.2 83 38.6
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 6.4e-08 61.2 86 36.0
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 6.4e-08 61.2 80 43.8
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 8.3e-08 60.8 81 37.0
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 8.3e-08 60.8 112 34.8
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 8.3e-08 60.8 100 41.0
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 8.3e-08 60.8 82 41.5
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.3e-08 60.8 85 38.8
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.1e-07 60.5 84 40.5
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-07 60.5 86 38.4
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.4e-07 60.1 80 37.5
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 1.4e-07 60.1 82 42.7
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 1.4e-07 60.1 83 41.0
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.4e-07 60.1 64 40.6
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 2.4e-07 59.3 85 38.8
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.4e-07 59.3 86 38.4
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 3.2e-07 58.9 81 37.0
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 3.2e-07 58.9 77 36.4
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 3.2e-07 58.9 80 36.2
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 4.1e-07 58.5 131 38.2
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.1e-07 58.5 106 33.0
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 4.1e-07 58.5 80 36.2
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 5.4e-07 58.2 135 32.6
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 5.4e-07 58.2 81 37.0
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.4e-07 58.2 80 40.0
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 5.4e-07 58.2 76 34.2
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 5.4e-07 58.2 102 31.4
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 5.4e-07 58.2 67 38.8
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 7.1e-07 57.8 96 41.7
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 7.1e-07 57.8 86 36.0
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 7.1e-07 57.8 64 45.3
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 7.1e-07 57.8 122 30.3
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 7.1e-07 57.8 120 32.5
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.1e-07 57.8 79 41.8
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 9.2e-07 57.4 80 38.8
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 9.2e-07 57.4 75 41.3
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 9.2e-07 57.4 81 40.7
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 9.2e-07 57.4 80 42.5
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 9.2e-07 57.4 112 34.8
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.2e-06 57.0 84 33.3
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 1.2e-06 57.0 86 38.4
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.2e-06 57.0 60 45.0
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.2e-06 57.0 56 46.4
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 1.2e-06 57.0 72 43.1
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 1.6e-06 56.6 79 36.7
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.6e-06 56.6 66 39.4
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.1e-06 56.2 79 39.2
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 2.1e-06 56.2 76 38.2
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 2.1e-06 56.2 82 36.6
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 2.7e-06 55.8 57 45.6
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 2.7e-06 55.8 81 38.3
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.7e-06 55.8 67 38.8
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.7e-06 55.8 75 41.3
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.5e-06 55.5 78 38.5
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.5e-06 55.5 55 41.8
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 3.5e-06 55.5 83 39.8
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.5e-06 55.5 67 38.8
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 4.6e-06 55.1 112 33.9
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 4.6e-06 55.1 82 46.3
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 6.0e-06 54.7 61 44.3
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 6.0e-06 54.7 63 42.9
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 6.0e-06 54.7 63 42.9
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 6.0e-06 54.7 113 35.4
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 7.8e-06 54.3 88 38.6
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 7.8e-06 54.3 82 32.9
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 7.8e-06 54.3 83 39.8
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 7.8e-06 54.3 79 34.2
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 7.8e-06 54.3 73 39.7
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.8e-06 54.3 79 36.7


User provided reference genes

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