Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.3e-128 463.0 228 100.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.5e-68 263.5 146 89.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 2.5e-66 256.1 145 84.1
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 7.2e-66 254.6 146 84.9
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 9.4e-66 254.2 146 85.6
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.2e-65 253.8 146 84.9
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.6e-65 252.3 146 84.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 6.1e-65 251.5 146 84.2
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 6.1e-65 251.5 146 84.2
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 6.1e-65 251.5 146 84.2
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 6.1e-65 251.5 146 82.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 7.9e-65 251.1 146 84.2
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.4e-64 250.4 146 83.6
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 1.4e-64 250.4 152 80.9
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.8e-64 250.0 146 84.2
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.3e-64 249.6 146 82.9
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.3e-64 249.6 146 82.9
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 3.9e-64 248.8 145 82.1
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.9e-64 248.8 146 83.6
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 3.9e-64 248.8 146 82.2
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.9e-64 248.8 146 83.6
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 5.1e-64 248.4 146 80.8
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 5.1e-64 248.4 146 82.2
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 6.7e-64 248.1 146 82.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.8e-64 247.7 146 82.9
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.8e-64 247.7 146 82.9
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 8.8e-64 247.7 146 83.6
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.8e-64 247.7 146 81.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 8.8e-64 247.7 146 80.8
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 81.5
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 82.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 81.5
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 81.5
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 81.5
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 80.8
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.5e-63 246.9 146 81.5
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.0e-63 246.5 146 81.5
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.0e-63 246.5 146 81.5
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.0e-63 246.5 146 82.2
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 2.0e-63 246.5 146 81.5
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.0e-63 246.5 146 81.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 2.0e-63 246.5 145 84.1
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.0e-63 246.5 146 82.2
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 2.6e-63 246.1 146 82.2
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.6e-63 246.1 146 82.9
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.4e-63 245.4 146 80.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 4.4e-63 245.4 146 81.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 5.7e-63 245.0 146 82.2
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 5.7e-63 245.0 144 82.6
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 7.4e-63 244.6 146 80.8
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 7.4e-63 244.6 146 79.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 7.4e-63 244.6 146 80.8
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 7.4e-63 244.6 146 81.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.4e-63 244.6 146 81.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 81.5
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 82.2
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 80.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 80.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 80.8
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 80.8
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 82.2
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.7e-63 244.2 146 80.8
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.3e-62 243.8 146 80.8
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.3e-62 243.8 145 81.4
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-62 243.8 146 82.2
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.7e-62 243.4 143 83.9
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.7e-62 243.4 140 85.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.7e-62 243.4 143 82.5
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.2e-62 243.0 146 80.8
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.8e-62 242.7 146 80.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.7e-62 242.3 146 80.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.7e-62 242.3 146 80.8
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 3.7e-62 242.3 146 80.8
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.8e-62 241.9 145 80.7
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.8e-62 241.9 146 80.8
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.8e-62 241.9 146 80.8
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 6.3e-62 241.5 146 80.1
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 6.3e-62 241.5 146 80.1
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 8.2e-62 241.1 146 79.5
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 8.2e-62 241.1 146 80.8
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 8.2e-62 241.1 146 80.1
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-61 240.7 145 80.7
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-61 240.7 145 80.7
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-61 240.7 145 80.7
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.1e-61 240.7 145 80.7
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.1e-61 240.7 145 80.7
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.1e-61 240.7 146 78.8
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-61 240.7 144 80.6
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.4e-61 240.4 146 80.1
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.4e-61 240.4 146 81.5
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.4e-61 240.4 146 81.5
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.4e-61 240.4 146 80.1
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.4e-61 240.4 145 79.3
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-61 240.0 145 80.0
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.4e-61 239.6 146 80.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 3.1e-61 239.2 146 79.5
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.1e-61 239.2 146 79.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 4.1e-61 238.8 145 80.0
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 4.1e-61 238.8 146 80.8
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 4.1e-61 238.8 145 80.0
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 5.3e-61 238.4 146 79.5
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 5.3e-61 238.4 146 78.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 5.3e-61 238.4 146 78.8
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 7.0e-61 238.0 146 79.5
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 7.0e-61 238.0 146 78.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 7.0e-61 238.0 146 79.5
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 9.1e-61 237.7 146 79.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 9.1e-61 237.7 146 78.8
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.2e-60 237.3 146 79.5
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.2e-60 237.3 146 78.8
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.2e-60 237.3 146 78.8
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.5e-60 236.9 145 80.0
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.6e-60 236.1 146 78.8
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 2.6e-60 236.1 145 79.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.6e-60 236.1 145 80.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.6e-60 236.1 145 80.0
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 3.5e-60 235.7 146 78.1
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.5e-60 235.3 146 77.4
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 5.9e-60 235.0 143 79.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.3e-59 233.8 146 78.1
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 8.5e-59 231.1 146 76.0
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.5e-58 230.3 145 79.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-58 229.9 140 80.7
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.9e-58 229.9 140 79.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.9e-58 229.9 159 72.3
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.5e-58 229.6 145 75.9
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.8e-54 215.3 144 75.7
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.4e-53 213.0 146 69.9
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.4e-53 213.0 140 70.0
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.0e-52 209.9 146 67.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 3.5e-52 209.1 147 70.1
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.5e-52 208.8 146 72.6
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 3.8e-51 205.7 146 70.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 6.5e-51 204.9 129 79.1
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.5e-51 204.5 118 82.2
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 5.5e-50 201.8 116 83.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 9.4e-50 201.1 143 65.7
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.2e-49 200.7 144 71.5
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-48 196.4 137 70.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 2.6e-47 193.0 117 81.2
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.1e-45 187.6 108 82.4
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 4.5e-44 182.2 175 57.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 2.7e-41 172.9 136 66.2
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.7e-41 172.2 136 67.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.1e-37 159.5 146 56.8
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.6e-36 157.1 146 63.0
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-32 144.1 129 64.3
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 2.4e-29 133.3 85 72.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.6e-25 120.6 151 51.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.0e-19 101.3 67 71.6
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.0e-19 101.3 72 66.7
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-19 101.3 67 71.6
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.0e-19 99.8 62 75.8
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.4e-16 90.9 72 54.2
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 6.8e-16 88.6 117 44.4
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 5.8e-15 85.5 88 46.6
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 2.7e-12 76.6 45 80.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 9.5e-10 68.2 39 82.1
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 3.6e-09 66.2 94 40.4
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-08 64.3 40 80.0
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-08 64.3 40 80.0
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.4e-08 64.3 109 39.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.3e-08 63.5 43 76.7
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 1.2e-07 61.2 56 58.9
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.4e-07 59.7 34 79.4


User provided reference genes

Program Settings