Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 0.0e+00 2223.0 1231 100.0
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 2.5e-189 667.2 1258 44.7
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 2.0e-178 630.9 1261 43.6
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.5e-154 551.6 1269 42.1
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 5.1e-150 536.6 1253 40.1
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 2.8e-148 530.8 1245 40.2
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 6.2e-148 529.6 1225 39.3
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 3.4e-146 523.9 1249 41.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 6.5e-145 519.6 1295 39.3
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 4.6e-143 513.5 1225 40.2
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 7.9e-143 512.7 1247 39.9
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.0e-142 512.3 1249 40.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.6e-140 505.0 1256 39.7
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 2.2e-140 504.6 1287 40.1
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.2e-138 498.8 1237 41.0
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 3.4e-138 497.3 1287 37.9
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 2.7e-135 487.6 1275 38.4
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 6.1e-135 486.5 1277 38.8
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 7.9e-135 486.1 1280 39.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.8e-134 485.0 1249 38.1
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 6.7e-134 483.0 1281 38.9
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 5.7e-133 479.9 1242 38.9
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 3.7e-132 477.2 1262 39.6
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.1e-131 475.7 1291 38.6
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.4e-131 475.3 1292 38.3
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.8e-131 474.9 1270 37.9
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 5.3e-131 473.4 1252 39.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.2e-130 472.2 1232 39.9
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 2.5e-128 464.5 1257 38.8
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 4.2e-128 463.8 1282 38.0
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.2e-127 462.2 1282 37.8
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 2.1e-127 461.5 1282 37.6
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.1e-125 455.7 1245 38.4
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-124 452.2 1287 37.7
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.7e-124 451.8 1288 37.5
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 2.4e-123 448.0 1222 39.3
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 3.1e-123 447.6 1264 37.8
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 9.1e-123 446.0 1224 37.9
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 5.9e-122 443.4 1285 36.5
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.3e-121 442.2 1277 36.5
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 5.0e-121 440.3 1270 37.7
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 8.5e-121 439.5 1260 37.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 3.2e-120 437.6 1258 36.4
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 5.5e-120 436.8 1231 38.4
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 5.5e-120 436.8 1252 34.5
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 2.7e-119 434.5 1286 36.9
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.0e-118 432.6 1285 35.9
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.1e-117 429.1 1288 36.4
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 2.0e-117 428.3 1253 37.8
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 4.4e-117 427.2 1267 36.0
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.2e-116 424.9 1332 34.3
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 3.7e-116 424.1 1286 37.9
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.6e-114 418.7 1275 38.0
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.0e-114 418.3 1176 38.0
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 2.6e-114 417.9 1246 37.7
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.1e-111 408.3 1295 36.2
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 6.7e-110 403.3 1241 36.2
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 6.7e-110 403.3 1265 35.9
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.5e-109 402.1 1282 36.3
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 8.3e-108 396.4 1263 36.9
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.4e-107 394.8 1304 33.8
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 1.2e-106 392.5 1229 36.0
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.7e-106 391.3 1265 31.9
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 3.5e-106 391.0 1263 32.4
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.0e-105 389.4 1219 36.7
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.7e-105 388.7 1220 36.0
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 7.2e-104 383.3 1244 33.1
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 1.2e-103 382.5 1237 35.3
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.0e-102 379.4 1276 35.2
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 4.0e-102 377.5 1243 34.9
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.2e-100 371.7 1231 33.6
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.1e-99 367.9 1433 32.9
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 2.9e-97 361.3 1282 34.1
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.0e-97 360.5 1123 37.4
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 4.2e-96 357.5 1236 35.3
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 4.2e-96 357.5 1223 33.1
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 2.1e-95 355.1 1292 34.0
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 6.1e-95 353.6 1237 34.7
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 4.0e-94 350.9 1224 33.5
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 4.0e-94 350.9 1282 34.3
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 5.7e-93 347.1 1146 35.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 6.3e-92 343.6 1255 33.1
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 5.4e-91 340.5 1258 29.7
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 9.2e-91 339.7 1222 34.0
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.5e-90 337.4 1236 29.4
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 5.0e-89 334.0 1254 29.5
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 6.6e-89 333.6 1217 33.5
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 3.6e-87 327.8 1185 34.5
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 7.5e-85 320.1 434 49.8
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 6.4e-84 317.0 1250 30.8
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 6.0e-82 310.5 1231 31.4
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 5.0e-81 307.4 1212 31.9
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 6.6e-81 307.0 728 35.0
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-79 302.8 1199 31.8
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.2e-79 302.8 1200 31.8
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 8.0e-79 300.1 1207 31.4
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 1.8e-78 298.9 1206 31.3
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 1.8e-78 298.9 1206 31.3
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 8.9e-78 296.6 458 46.5
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 9.8e-77 293.1 389 49.6
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 3.7e-76 291.2 1224 33.7
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 4.0e-70 271.2 1064 34.7
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 3.4e-61 241.5 479 38.4
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 3.5e-58 231.5 1101 32.6
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.1e-56 226.5 1067 28.8
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.6e-53 213.8 296 50.7
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 8.4e-52 210.3 1268 30.0
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 7.1e-51 207.2 1150 25.9
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 2.7e-50 205.3 436 37.8
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.3e-49 202.2 206 56.8
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 5.1e-49 201.1 913 35.9
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 5.8e-45 187.6 420 35.0
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 1.1e-43 183.3 284 45.4
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 4.2e-43 181.4 1087 30.0
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 7.1e-43 180.6 432 36.1
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 3.0e-41 175.3 1208 26.8
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 3.0e-41 175.3 168 56.5
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.3e-39 169.9 600 28.8
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 9.0e-38 163.7 436 33.7
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-35 156.8 953 26.2
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 3.3e-32 145.2 307 36.2
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 3.3e-32 145.2 123 63.4
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 2.1e-31 142.5 125 60.0
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 4.0e-30 138.3 590 29.2
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 4.5e-29 134.8 645 26.4
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 2.5e-24 119.0 1082 27.7
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.7e-24 117.9 191 39.3
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 7.4e-24 117.5 677 27.3
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.9e-19 102.8 64 70.3
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.5e-19 102.4 207 35.7
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 4.6e-18 98.2 103 46.6
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.8e-17 96.3 670 33.7
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 5.7e-16 91.3 497 27.6
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 5.9e-13 81.3 161 36.6
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.0e-12 80.5 223 31.4
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.7e-12 79.7 254 31.9
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 5.0e-12 78.2 60 58.3
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.5e-12 77.4 104 51.0
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 8.5e-12 77.4 81 55.6
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 1.0e-09 70.5 210 29.5
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 8.8e-09 67.4 74 54.1
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 2.0e-08 66.2 181 33.7
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 7.4e-08 64.3 92 51.1
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.8e-07 61.6 88 46.6


User provided reference genes

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