Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.0e-63 244.2 117 100.0
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 3.6e-29 131.7 68 94.1
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 9.9e-11 70.5 62 51.6
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 6.4e-10 67.8 50 60.0
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.3e-10 67.4 84 39.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 8.3e-10 67.4 73 47.9
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 8.3e-10 67.4 72 48.6
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.4e-09 66.6 75 45.3
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 2.4e-09 65.9 53 54.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 4.1e-09 65.1 66 50.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.4e-09 64.7 65 49.2
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.2e-08 63.5 72 43.1
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.2e-08 63.5 50 54.0
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.6e-08 63.2 74 45.9
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.6e-08 63.2 52 51.9
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 2.1e-08 62.8 56 48.2
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.1e-08 62.8 50 58.0
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.1e-08 62.8 62 50.0
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 2.1e-08 62.8 67 47.8
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.1e-08 62.8 65 47.7
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.7e-08 62.4 53 49.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.7e-08 62.4 53 49.1
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.7e-08 62.4 68 47.1
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.7e-08 62.4 68 47.1
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.7e-08 62.4 68 47.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 2.7e-08 62.4 59 52.5
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.5e-08 62.0 53 49.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 3.5e-08 62.0 53 49.1
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 3.5e-08 62.0 53 49.1
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 3.5e-08 62.0 72 40.3
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.5e-08 62.0 50 54.0
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.5e-08 62.0 50 54.0
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.5e-08 62.0 50 54.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.5e-08 62.0 50 54.0
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 3.5e-08 62.0 53 50.9
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.5e-08 62.0 56 50.0
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 3.5e-08 62.0 60 48.3
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 4.6e-08 61.6 79 40.5
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.6e-08 61.6 53 49.1
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.6e-08 61.6 60 45.0
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 4.6e-08 61.6 61 45.9
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.6e-08 61.6 55 50.9
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 6.0e-08 61.2 50 52.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 6.0e-08 61.2 62 46.8
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 6.0e-08 61.2 53 50.9
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 6.0e-08 61.2 59 45.8
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 6.0e-08 61.2 59 45.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 49.1
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 49.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 49.1
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 49.1
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 49.1
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 49.1
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 50.9
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 7.8e-08 60.8 53 50.9
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 7.8e-08 60.8 50 52.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.8e-08 60.8 62 48.4
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 7.8e-08 60.8 65 49.2
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 7.8e-08 60.8 50 50.0
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.0e-07 60.5 55 47.3
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.0e-07 60.5 59 44.1
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.0e-07 60.5 63 47.6
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.0e-07 60.5 49 51.0
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.0e-07 60.5 49 51.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.0e-07 60.5 62 48.4
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.0e-07 60.5 64 45.3
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.3e-07 60.1 53 47.2
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.3e-07 60.1 53 47.2
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.3e-07 60.1 53 47.2
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.7e-07 59.7 49 51.0
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.7e-07 59.7 77 39.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.7e-07 59.7 50 52.0
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.7e-07 59.7 69 43.5
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.3e-07 59.3 53 47.2
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 2.3e-07 59.3 50 48.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.3e-07 59.3 53 45.3
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-07 59.3 62 46.8
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-07 59.3 52 51.9
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.3e-07 59.3 64 43.8
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.3e-07 59.3 64 43.8
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.3e-07 59.3 64 43.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.3e-07 59.3 62 45.2
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 3.0e-07 58.9 59 42.4
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.0e-07 58.9 49 51.0
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.0e-07 58.9 49 51.0
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 3.0e-07 58.9 59 44.1
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 3.0e-07 58.9 52 48.1
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.9e-07 58.5 55 45.5
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 3.9e-07 58.5 67 38.8
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.9e-07 58.5 61 45.9
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.1e-07 58.2 56 46.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.1e-07 58.2 56 46.4
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 5.1e-07 58.2 65 44.6
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 5.1e-07 58.2 50 52.0
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 5.1e-07 58.2 59 42.4
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 6.6e-07 57.8 67 44.8
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 6.6e-07 57.8 67 44.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.6e-07 57.8 52 50.0
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.6e-07 57.8 52 50.0
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 6.6e-07 57.8 49 49.0
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.6e-07 57.4 49 49.0
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 8.6e-07 57.4 50 48.0
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 1.5e-06 56.6 50 46.0
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.5e-06 56.6 62 40.3
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.5e-06 56.6 51 45.1
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.5e-06 56.6 64 42.2
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.9e-06 56.2 52 48.1
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.9e-06 56.2 52 48.1
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.9e-06 56.2 76 39.5
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.5e-06 55.8 50 48.0
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.5e-06 55.8 50 48.0
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 5.6e-06 54.7 68 41.2
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 5.6e-06 54.7 53 47.2
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 5.6e-06 54.7 52 46.2
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 5.6e-06 54.7 49 46.9
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 7.3e-06 54.3 56 41.1
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 7.3e-06 54.3 48 47.9


User provided reference genes

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