Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1741.9 906 100.0
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1250.0 908 72.0
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1249.2 912 72.7
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1240.3 906 72.1
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1215.3 912 70.0
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1198.3 906 69.9
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1194.1 908 69.1
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1188.7 905 69.1
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1186.0 906 68.5
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1179.5 903 67.8
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1178.3 907 68.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1173.7 905 67.6
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1173.3 905 67.8
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1170.6 908 66.9
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1167.5 909 68.9
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1164.4 907 67.3
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1164.1 905 68.5
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1164.1 905 67.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1163.3 909 67.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1162.9 905 67.6
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1161.7 909 69.2
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1159.4 905 67.3
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1158.7 905 67.5
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1158.3 908 67.7
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1151.3 905 67.7
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1148.3 905 67.1
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1148.3 904 66.3
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1144.4 903 67.1
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1144.4 908 67.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1142.5 917 66.4
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1140.2 908 67.0
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1137.1 907 66.8
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1135.6 908 65.7
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1134.8 911 66.5
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1129.4 906 66.6
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1128.6 905 66.6
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1127.9 905 66.1
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1126.3 984 62.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1124.8 905 66.2
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1122.8 905 65.9
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1122.1 905 65.9
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1121.3 903 66.0
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1119.8 905 66.2
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1118.6 882 67.3
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1116.7 905 66.3
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1115.9 831 71.7
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1115.5 905 66.5
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1114.0 904 65.0
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1111.7 861 68.3
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1110.1 908 64.6
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1109.7 904 64.8
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1106.3 905 64.2
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1102.8 904 64.5
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1101.3 930 64.7
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1099.0 908 64.9
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1090.1 941 63.0
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1077.8 908 65.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 4.3e-311 1071.2 908 64.2
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 2.7e-310 1068.5 909 63.1
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 3.0e-309 1065.1 907 62.8
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 2.0e-308 1062.4 910 62.9
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 4.4e-308 1061.2 919 62.9
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 6.3e-307 1057.4 907 62.7
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 3.8e-304 1048.1 905 62.4
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 6.1e-302 1040.8 919 61.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 8.0e-302 1040.4 919 61.5
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 1.4e-301 1039.6 908 61.3
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 4.0e-301 1038.1 908 61.8
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 4.0e-301 1038.1 938 60.0
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 1.2e-300 1036.6 930 61.1
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 3.4e-300 1035.0 908 61.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 6.4e-299 1030.8 901 61.0
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 2.4e-298 1028.9 938 59.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 3.2e-298 1028.5 904 61.9
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 2.0e-297 1025.8 910 62.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 2.7e-297 1025.4 903 61.1
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 6.6e-296 1020.8 913 60.7
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 8.6e-296 1020.4 910 61.1
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 2.5e-295 1018.8 905 61.7
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 2.1e-294 1015.8 930 60.2
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 1.4e-293 1013.1 907 62.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 5.2e-293 1011.1 936 59.6
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 5.8e-292 1007.7 927 59.3
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 6.0e-289 997.7 893 60.5
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.0e-288 996.9 858 63.9
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 2.3e-288 995.7 944 59.4
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 3.3e-287 991.9 927 59.1
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 6.8e-285 984.2 906 59.5
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 5.8e-284 981.1 939 59.9
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 7.1e-282 974.2 1007 55.4
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 4.6e-281 971.5 927 58.5
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.9e-279 966.1 919 58.5
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.3e-279 965.3 913 58.3
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.2e-278 963.4 921 59.3
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 2.6e-276 955.7 921 59.4
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 3.9e-272 941.8 891 59.1
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 3.3e-271 938.7 935 57.2
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 3.3e-271 938.7 775 64.3
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.9e-269 930.6 905 58.6
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 8.9e-269 930.6 963 55.6
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 1.3e-264 916.8 990 55.8
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 8.1e-262 907.5 914 56.5
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.6e-257 891.7 632 73.3
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.1e-254 882.9 976 53.2
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 6.9e-253 877.9 908 56.1
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 2.6e-252 875.9 922 54.1
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.1e-242 844.0 827 58.5
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 2.5e-242 842.8 709 64.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.5e-242 842.8 921 52.8
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.1e-241 839.7 905 54.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 8.7e-240 834.3 939 51.0
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 2.2e-235 819.7 914 53.0
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 6.1e-217 758.4 930 48.3
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.6e-215 753.1 778 56.6
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.2e-211 740.0 585 66.5
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.7e-209 733.0 921 47.2
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.8e-208 730.3 515 73.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.5e-191 674.1 900 45.4
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 5.6e-178 629.0 776 48.7
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.4e-173 613.6 714 51.5
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.7e-171 607.4 531 63.3
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 2.2e-166 590.5 552 58.7
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 5.1e-163 579.3 431 69.8
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 6.2e-129 466.1 1059 33.4
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.4e-128 464.9 413 62.5
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.7e-126 458.0 350 68.9
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 6.3e-121 439.5 359 66.3
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.8e-115 421.4 363 64.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 6.9e-112 409.5 323 67.8
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 2.8e-105 387.5 273 74.4
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.3e-102 378.6 400 54.8
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.9e-101 374.8 284 69.7
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.7e-100 370.9 393 53.9
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 9.7e-98 362.5 394 52.5
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.0e-94 352.4 415 50.8
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 6.1e-92 343.2 385 51.9
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.8e-91 341.7 355 55.5
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.5e-82 312.0 225 70.7
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.7e-62 245.4 216 59.3
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.5e-61 241.5 161 77.0
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.5e-53 214.9 203 57.1
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.1e-45 189.5 200 51.5
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.3e-45 186.8 108 84.3
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 5.1e-38 164.1 126 66.7
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 6.2e-36 157.1 103 74.8
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 6.6e-30 137.1 96 71.9
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.8e-27 129.0 111 65.8
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.3e-22 112.1 87 69.0
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 7.4e-21 107.1 104 51.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.4e-19 102.8 178 38.2
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 9.0e-19 100.1 86 57.0
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.1e-16 93.2 100 50.0
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.6e-15 89.4 81 50.6
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.7e-15 88.6 62 71.0
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.7e-15 88.6 62 71.0
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 7.9e-15 87.0 145 40.0
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.9e-14 84.7 49 83.7
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 4.8e-12 77.8 83 48.2
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 4.8e-12 77.8 83 48.2
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.5e-10 72.8 68 58.8
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.3e-09 69.7 52 63.5
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 4.9e-09 67.8 52 65.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 4.9e-09 67.8 65 52.3
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 3.2e-08 65.1 39 71.8
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.8e-06 59.3 356 21.6


User provided reference genes

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