Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.6e-100 369.4 178 100.0
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.1e-32 142.1 72 93.1
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 6.1e-20 101.7 72 63.9
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.1e-20 101.7 72 66.7
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.1e-19 98.6 72 63.9
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 8.8e-19 97.8 72 62.5
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.3e-18 95.9 109 46.8
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 7.4e-18 94.7 72 61.1
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.4e-18 94.7 72 62.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 7.4e-18 94.7 72 62.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.8e-17 92.8 81 56.8
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 3.7e-17 92.4 75 62.7
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 3.7e-17 92.4 70 62.9
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.8e-17 92.0 72 56.9
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 8.2e-17 91.3 72 61.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 8.2e-17 91.3 75 58.7
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.1e-16 90.9 75 58.7
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.4e-16 90.5 72 62.5
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.4e-16 90.5 72 56.9
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.8e-16 90.1 72 63.9
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.1e-16 89.4 71 56.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 3.1e-16 89.4 72 58.3
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 3.1e-16 89.4 72 58.3
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 3.1e-16 89.4 72 58.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 4.1e-16 89.0 72 58.3
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.1e-16 89.0 75 57.3
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 4.1e-16 89.0 72 59.7
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 4.1e-16 89.0 72 59.7
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 5.3e-16 88.6 72 56.9
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.9e-16 88.2 72 56.9
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 9.1e-16 87.8 72 59.7
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 9.1e-16 87.8 88 53.4
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 9.1e-16 87.8 72 56.9
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-15 87.4 72 56.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.2e-15 87.4 72 59.7
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.5e-15 87.0 73 53.4
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.5e-15 87.0 79 53.2
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.5e-15 87.0 79 53.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.5e-15 87.0 79 53.2
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.5e-15 87.0 72 56.9
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.5e-15 87.0 72 59.7
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 2.0e-15 86.7 72 55.6
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 2.0e-15 86.7 70 58.6
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 2.0e-15 86.7 72 58.3
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.0e-15 86.7 74 56.8
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 2.6e-15 86.3 72 56.9
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.6e-15 86.3 79 53.2
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.4e-15 85.9 72 54.2
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 3.4e-15 85.9 72 58.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 4.5e-15 85.5 72 55.6
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 4.5e-15 85.5 73 54.8
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 5.9e-15 85.1 72 54.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.9e-15 85.1 83 50.6
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 5.9e-15 85.1 72 54.2
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 7.7e-15 84.7 72 55.6
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.0e-14 84.3 72 54.2
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.0e-14 84.3 72 55.6
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.3e-14 84.0 70 54.3
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-14 84.0 116 44.0
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.7e-14 83.6 72 52.8
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 1.7e-14 83.6 72 58.3
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.2e-14 83.2 72 55.6
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.9e-14 82.8 72 51.4
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 3.8e-14 82.4 79 50.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 3.8e-14 82.4 98 45.9
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.0e-14 82.0 72 54.2
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 5.0e-14 82.0 72 55.6
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 6.5e-14 81.6 84 48.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 6.5e-14 81.6 72 51.4
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 6.5e-14 81.6 72 51.4
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.1e-13 80.9 66 56.1
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.1e-13 80.9 70 54.3
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.1e-13 80.9 72 54.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.1e-13 80.9 72 50.0
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.1e-13 80.9 74 56.8
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 1.4e-13 80.5 89 43.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.9e-13 80.1 72 52.8
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.9e-13 80.1 72 54.2
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.5e-13 79.7 72 51.4
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 3.2e-13 79.3 72 51.4
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 3.2e-13 79.3 72 54.2
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 4.2e-13 79.0 74 51.4
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.5e-13 78.6 72 50.0
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.5e-13 78.6 79 49.4
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 5.5e-13 78.6 72 50.0
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 5.5e-13 78.6 72 51.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 5.5e-13 78.6 79 50.6
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 7.2e-13 78.2 72 52.8
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 7.2e-13 78.2 72 51.4
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 7.2e-13 78.2 72 55.6
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 9.4e-13 77.8 71 52.1
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 9.4e-13 77.8 72 56.9
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 9.4e-13 77.8 72 56.9
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.6e-12 77.0 72 48.6
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 2.1e-12 76.6 73 54.8
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 2.1e-12 76.6 72 50.0
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 2.7e-12 76.3 72 50.0
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.7e-12 76.3 72 54.2
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 4.7e-12 75.5 79 45.6
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 4.7e-12 75.5 79 44.3
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 6.1e-12 75.1 72 48.6
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 6.1e-12 75.1 73 53.4
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 8.0e-12 74.7 72 52.8
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 8.0e-12 74.7 72 52.8
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 8.0e-12 74.7 72 51.4
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 8.0e-12 74.7 72 50.0
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 8.0e-12 74.7 64 59.4
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.0e-11 74.3 72 47.2
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.0e-11 74.3 72 47.2
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.0e-11 74.3 72 47.2
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.0e-11 74.3 72 47.2
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.3e-11 73.2 72 45.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 3.0e-11 72.8 72 47.2
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 5.2e-11 72.0 72 52.8
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 6.7e-11 71.6 72 47.2
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 8.8e-11 71.2 71 46.5
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.8e-11 71.2 72 45.8
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 2.6e-10 69.7 64 50.0
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.3e-10 69.3 72 44.4
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 4.4e-10 68.9 72 54.2
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 7.4e-10 68.2 59 57.6
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 4.8e-09 65.5 72 48.6
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 3.1e-08 62.8 78 44.9
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 7.0e-08 61.6 71 43.7
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.6e-07 60.5 80 41.2
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 1.3e-06 57.4 71 39.4


User provided reference genes

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