Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G162 Amborella trichopoda HOM05D003550 ORTHO05D004336 3.0e-59 231.5 105 100.0
ATR0719G001 Amborella trichopoda HOM05D003550 ORTHO05D004336 3.3e-34 148.3 85 81.2
ATR0782G192 Amborella trichopoda HOM05D003550 ORTHO05D004336 5.9e-31 137.5 75 84.0
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 1.5e-21 106.3 85 58.8
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 9.4e-21 103.6 77 58.4
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 9.4e-21 103.6 84 57.1
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 3.6e-20 101.7 83 56.6
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 3.6e-20 101.7 83 56.6
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.0e-19 100.1 98 46.9
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.0e-19 100.1 98 46.9
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 1.4e-19 99.8 81 58.0
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 1.4e-19 99.8 83 55.4
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 1.8e-19 99.4 75 58.7
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 1.8e-19 99.4 89 51.7
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 2.3e-19 99.0 85 51.8
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 2.3e-19 99.0 74 62.2
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 2.3e-19 99.0 75 56.0
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 2.3e-19 99.0 75 57.3
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 2.3e-19 99.0 81 55.6
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 2.3e-19 99.0 92 50.0
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 3.0e-19 98.6 89 49.4
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 4.0e-19 98.2 79 58.2
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 4.0e-19 98.2 93 47.3
CDE09G1076 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 5.2e-19 97.8 90 51.1
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 6.8e-19 97.4 87 51.7
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 6.8e-19 97.4 73 58.9
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 6.8e-19 97.4 91 47.3
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 8.8e-19 97.1 87 51.7
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 8.8e-19 97.1 75 56.0
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 8.8e-19 97.1 77 55.8
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 55.8
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 55.8
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 55.8
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 55.8
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 55.8
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 57.1
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.2e-18 96.7 77 57.1
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 1.2e-18 96.7 79 55.7
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 1.5e-18 96.3 75 54.7
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 1.5e-18 96.3 80 53.8
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 1.5e-18 96.3 77 54.5
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 2.0e-18 95.9 75 54.7
Cpa.g.sc847.2 Carica papaya HOM05D003550 ORTHO05D004336 2.0e-18 95.9 85 51.8
CDE02G3571 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.0e-18 95.9 90 50.0
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 2.0e-18 95.9 77 54.5
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 2.0e-18 95.9 81 53.1
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 2.6e-18 95.5 75 54.7
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 2.6e-18 95.5 77 54.5
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 2.6e-18 95.5 77 54.5
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 3.4e-18 95.1 75 54.7
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 3.4e-18 95.1 77 53.2
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 3.4e-18 95.1 77 53.2
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 3.4e-18 95.1 74 55.4
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 3.4e-18 95.1 77 55.8
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 4.4e-18 94.7 82 50.0
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 4.4e-18 94.7 82 50.0
Medtr0137s0080 Medicago truncatula HOM05D003550 ORTHO05D004336 4.4e-18 94.7 74 55.4
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 4.4e-18 94.7 74 55.4
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 4.4e-18 94.7 82 53.7
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 4.4e-18 94.7 77 55.8
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 4.4e-18 94.7 92 46.7
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 4.4e-18 94.7 74 55.4
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 5.7e-18 94.4 79 53.2
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 5.7e-18 94.4 88 50.0
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 7.5e-18 94.0 77 53.2
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 7.5e-18 94.0 74 56.8
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 7.5e-18 94.0 85 49.4
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 7.5e-18 94.0 77 53.2
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 7.5e-18 94.0 77 53.2
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 7.5e-18 94.0 77 53.2
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 7.5e-18 94.0 73 53.4
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 7.5e-18 94.0 93 48.4
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 9.8e-18 93.6 74 56.8
MD02G1282000 Malus domestica HOM05D003550 ORTHO05D004336 9.8e-18 93.6 77 53.2
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 9.8e-18 93.6 75 52.0
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 1.3e-17 93.2 92 45.7
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 1.3e-17 93.2 92 45.7
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 1.3e-17 93.2 86 48.8
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 1.7e-17 92.8 85 50.6
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 1.7e-17 92.8 74 54.1
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 2.2e-17 92.4 88 46.6
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 2.2e-17 92.4 88 46.6
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 2.2e-17 92.4 88 46.6
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 2.2e-17 92.4 88 46.6
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 2.2e-17 92.4 75 52.0
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 2.2e-17 92.4 74 54.1
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 2.8e-17 92.0 77 51.9
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.8e-17 92.0 77 53.2
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 2.8e-17 92.0 107 44.9
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 3.7e-17 91.7 86 48.8
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 3.7e-17 91.7 86 48.8
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 4.8e-17 91.3 74 54.1
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 4.8e-17 91.3 75 52.0
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 6.3e-17 90.9 75 50.7
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 6.3e-17 90.9 75 50.7
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 6.3e-17 90.9 77 51.9
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 8.3e-17 90.5 74 51.4
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 8.3e-17 90.5 74 51.4
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.1e-16 90.1 73 54.8
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 1.1e-16 90.1 74 54.1
SMO271G0056 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 1.4e-16 89.7 74 54.1
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 2.4e-16 89.0 74 52.7
Os05g0392050 Oryza sativa ssp. japonica HOM05D003550 ORTHO05D004336 3.1e-16 88.6 74 51.4
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 4.1e-16 88.2 76 50.0
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 4.1e-16 88.2 76 52.6
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 5.4e-16 87.8 79 49.4
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 1.2e-15 86.7 75 52.0
HanXRQChr15g0481051 Helianthus annuus HOM05D003550 ORTHO05D004336 1.2e-15 86.7 101 42.6
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 1.6e-15 86.3 85 49.4
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 5.9e-15 84.3 74 51.4
SHI04015 Sapria himalayana HOM05D003550 ORTHO05D000023 7.7e-15 84.0 74 45.9
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 1.0e-14 83.6 86 46.5
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.9e-13 79.3 83 44.6
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 2.5e-13 79.0 84 41.7
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 2.3e-11 72.4 93 36.6
ClCG02G022810 Citrullus lanatus HOM05D003550 ORTHO05D004336 2.3e-11 72.4 88 40.9
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.3e-11 72.4 72 45.8
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 2.3e-11 72.4 72 45.8
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 2.3e-11 72.4 76 40.8
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 8.8e-11 70.5 76 40.8
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 2.6e-10 68.9 105 36.2
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 7.5e-10 67.4 74 40.5
BolC2t06570H Brassica oleracea HOM05D003550 ORTHO05D004336 9.8e-10 67.0 50 52.0
CSS0028124 Camellia sinensis var. sinensis HOM05D031701 ORTHO05D004336 3.7e-09 65.1 74 40.5
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 6.3e-09 64.3 81 38.3
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 1.4e-08 63.2 41 61.0
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 1.4e-08 63.2 87 36.8
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 9.2e-08 60.5 44 56.8
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 1.6e-07 59.7 75 38.7
Lj9A657G27 Lonicera japonica HOM05D003550 ORTHO05D004336 2.7e-07 58.9 41 56.1


User provided reference genes

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