Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 0.0e+00 2376.7 1316 100.0
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 9.3e-283 977.6 1129 50.2
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 9.6e-280 967.6 1261 47.3
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.5e-272 943.0 1104 50.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 4.3e-272 942.2 1144 48.8
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 1.1e-259 901.0 1134 46.8
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 3.5e-258 896.0 1008 50.1
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.8e-257 893.6 1163 46.7
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 1.5e-256 890.6 1141 46.0
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 4.3e-256 889.0 1184 45.1
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.3e-255 887.5 1171 45.8
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 5.3e-254 882.1 1143 44.9
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 2.6e-253 879.8 1185 45.7
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 2.9e-252 876.3 1147 46.5
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 3.2e-251 872.8 1132 46.5
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 9.4e-251 871.3 1138 45.3
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 2.7e-250 869.8 1192 43.9
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 8.8e-249 864.8 1098 46.2
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 2.0e-248 863.6 1140 45.6
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 2.0e-248 863.6 1157 44.3
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 9.1e-246 854.7 1190 44.2
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 2.0e-245 853.6 1139 44.8
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.2e-244 850.1 1160 44.1
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 2.9e-244 849.7 1126 45.4
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-243 847.8 1158 44.4
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 5.5e-243 845.5 1057 47.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 7.2e-243 845.1 1178 44.1
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.2e-242 844.3 1085 45.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 1.4e-241 840.9 1140 44.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 6.7e-241 838.6 1182 43.2
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.1e-240 837.8 1179 44.0
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.5e-240 837.4 1146 45.2
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 2.6e-240 836.6 1150 43.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 9.7e-240 834.7 1012 48.0
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.3e-239 834.3 1163 44.4
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 4.1e-238 829.3 1093 45.6
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.1e-238 829.3 1132 44.8
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 9.1e-238 828.2 1185 43.5
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 9.1e-238 828.2 1152 45.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 4.5e-237 825.9 1175 43.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.3e-236 824.3 1146 43.5
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 2.9e-236 823.2 1137 43.4
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.0e-236 822.4 1096 44.4
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 8.5e-236 821.6 1087 45.7
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.1e-235 821.2 1162 44.2
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.9e-235 820.5 1121 44.7
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.9e-235 820.5 1162 44.3
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 2.5e-235 820.1 1149 43.1
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 7.2e-235 818.5 1068 45.6
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 4.7e-234 815.8 1136 42.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 4.7e-234 815.8 1172 41.8
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.0e-233 814.7 1151 44.5
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.3e-233 813.5 1256 41.5
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 5.2e-233 812.4 1110 44.6
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 6.7e-233 812.0 1142 42.7
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.6e-232 810.1 1163 43.3
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 7.4e-232 808.5 1096 44.5
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.3e-231 807.7 1165 44.0
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 4.8e-231 805.8 1161 42.4
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.4e-230 803.5 1133 42.1
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 4.1e-230 802.7 1209 41.4
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 3.5e-229 799.7 1151 43.1
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 7.7e-229 798.5 1035 46.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.3e-228 797.7 1106 44.1
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.7e-228 797.3 1210 42.3
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.2e-228 797.0 1086 44.2
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.9e-228 796.6 1079 43.7
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.2e-226 791.2 1163 41.7
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.6e-226 790.8 1075 44.1
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.0e-225 786.2 1141 43.2
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 4.0e-225 786.2 1202 41.3
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 8.8e-225 785.0 1160 41.7
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.2e-224 784.6 1104 44.0
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.5e-224 784.3 1183 41.1
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.6e-224 783.5 1104 44.0
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.6e-224 783.5 1104 44.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.7e-224 781.6 1057 44.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 2.2e-223 780.4 1103 43.5
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 2.2e-223 780.4 1213 41.4
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 3.7e-223 779.6 1108 43.3
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.8e-222 777.3 1093 44.5
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 3.5e-221 773.1 1097 43.4
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 7.7e-221 771.9 1035 44.9
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 2.1e-218 763.8 1250 39.2
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 4.7e-218 762.7 1190 41.2
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 8.8e-217 758.4 1118 42.7
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 9.1e-214 748.4 1009 45.6
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 6.6e-212 742.3 998 44.7
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-208 731.1 1118 41.9
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 8.9e-201 705.3 996 43.4
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.2e-200 704.9 1165 40.6
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 9.8e-200 701.8 1166 40.0
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.3e-199 701.4 1021 43.3
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.0e-196 691.8 1135 40.0
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 4.7e-194 682.9 1106 41.5
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 5.2e-193 679.5 1090 39.7
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 9.5e-187 658.7 1050 41.9
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 4.7e-186 656.4 1176 37.7
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.1e-185 653.7 1193 37.9
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.1e-181 641.0 552 60.9
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.4e-177 628.2 1204 35.5
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.8e-177 627.9 974 40.3
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.7e-175 621.3 1036 38.7
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 4.0e-169 600.1 515 59.2
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 9.0e-169 599.0 991 38.7
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.0e-156 557.4 525 54.9
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.7e-154 550.4 1084 34.5
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 3.2e-150 537.3 1027 35.5
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 8.4e-143 512.7 605 48.8
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 6.5e-111 406.8 1057 29.7
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.8e-69 268.5 249 55.4
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 4.3e-54 218.0 179 60.9
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.2e-51 209.9 545 32.3
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-48 199.9 236 44.5
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 7.4e-46 190.7 207 49.8
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.0e-40 171.0 154 57.1
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.8e-39 169.5 586 26.8
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 2.0e-35 156.0 137 56.9
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.2e-32 146.7 105 64.8
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 2.3e-31 142.5 650 23.5
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.0e-26 124.8 97 63.9
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-22 113.6 95 57.9
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 5.3e-20 104.8 110 50.0
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.0e-18 100.5 122 47.5
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 3.6e-16 92.0 84 53.6
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.3e-15 89.4 80 61.2
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.7e-15 87.8 120 41.7
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.3e-14 85.1 125 40.8
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.9e-09 69.7 113 36.3
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 7.2e-09 67.8 59 52.5
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 3.6e-08 65.5 115 34.8
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 3.0e-07 62.4 64 48.4
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 3.0e-07 62.4 61 49.2
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.0e-07 62.4 53 47.2


User provided reference genes

Program Settings