Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.0e-70 270.0 140 100.0
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 8.3e-57 223.8 140 86.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.1e-32 141.0 135 53.3
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.5e-29 132.5 134 51.5
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 3.3e-29 132.1 135 49.6
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 5.6e-29 131.3 130 50.8
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 9.6e-29 130.6 131 50.4
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 9.6e-29 130.6 131 50.4
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 9.6e-29 130.6 130 51.5
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 9.6e-29 130.6 126 49.2
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.3e-28 130.2 130 52.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.6e-28 129.8 137 48.2
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.1e-28 129.4 126 50.0
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.1e-28 129.4 139 48.2
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 2.8e-28 129.0 126 50.0
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.8e-28 128.3 127 53.5
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 4.8e-28 128.3 135 49.6
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 8.1e-28 127.5 125 51.2
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 8.1e-28 127.5 135 49.6
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.8e-27 126.3 131 47.3
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 4.0e-27 125.2 131 50.4
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.2e-26 123.6 126 50.0
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.2e-26 123.6 130 46.9
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 1.2e-26 123.6 126 50.8
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.6e-26 122.5 126 52.4
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 4.5e-26 121.7 127 54.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.8e-26 121.3 138 47.8
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 5.8e-26 121.3 127 54.3
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 7.6e-26 120.9 130 47.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 9.9e-26 120.6 131 48.1
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 9.9e-26 120.6 138 47.8
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 9.9e-26 120.6 126 46.8
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.7e-25 119.8 126 52.4
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.9e-25 119.0 133 48.9
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.9e-25 119.0 133 48.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 3.8e-25 118.6 131 46.6
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 3.8e-25 118.6 126 46.8
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 4.9e-25 118.2 131 48.9
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.4e-25 117.9 133 48.1
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 6.4e-25 117.9 133 48.1
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 8.4e-25 117.5 131 45.8
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.4e-24 116.7 88 63.6
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.4e-24 116.7 131 45.8
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.4e-24 116.7 131 48.1
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.9e-24 116.3 133 47.4
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.4e-24 115.9 131 45.0
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.4e-24 115.9 127 48.0
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.4e-24 115.9 130 46.9
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 3.2e-24 115.5 121 52.9
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.2e-24 115.2 139 43.2
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 4.2e-24 115.2 130 45.4
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 7.1e-24 114.4 127 45.7
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 9.3e-24 114.0 126 47.6
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 9.3e-24 114.0 131 46.6
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.6e-23 113.2 129 48.8
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.6e-23 113.2 131 45.8
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.6e-23 113.2 126 46.0
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.1e-23 112.8 126 50.8
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.1e-23 112.8 126 47.6
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 2.7e-23 112.5 126 46.8
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 2.7e-23 112.5 134 47.8
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.6e-23 111.7 101 54.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.6e-23 111.7 126 50.8
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 4.6e-23 111.7 128 48.4
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.6e-23 111.7 129 46.5
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 6.0e-23 111.3 139 44.6
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 6.0e-23 111.3 130 47.7
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 6.0e-23 111.3 126 50.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 7.9e-23 110.9 127 48.8
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 7.9e-23 110.9 130 46.9
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.0e-22 110.5 94 61.7
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.0e-22 110.5 81 64.2
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 2.3e-22 109.4 87 59.8
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.3e-22 109.4 131 45.8
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.3e-22 109.4 115 47.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 2.3e-22 109.4 126 45.2
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-22 109.4 125 44.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.0e-22 109.0 133 46.6
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.0e-22 109.0 133 46.6
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.0e-22 109.0 133 43.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 3.9e-22 108.6 131 45.8
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.9e-22 108.6 130 44.6
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 3.9e-22 108.6 108 53.7
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.9e-22 108.6 141 44.0
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 3.9e-22 108.6 129 46.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 3.9e-22 108.6 131 43.5
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.1e-22 108.2 134 46.3
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 5.1e-22 108.2 130 43.1
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.1e-22 108.2 120 47.5
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 6.7e-22 107.8 131 44.3
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 6.7e-22 107.8 131 41.2
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 8.7e-22 107.5 91 61.5
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.3e-21 105.5 134 44.8
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.6e-21 104.8 126 46.8
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 7.4e-21 104.4 134 44.0
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 9.6e-21 104.0 131 42.0
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 9.6e-21 104.0 131 41.2
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 9.6e-21 104.0 125 44.8
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.3e-20 103.6 132 40.9
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.1e-20 102.8 125 43.2
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.1e-20 102.8 131 42.7
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 8.1e-20 100.9 134 44.8
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 2.4e-19 99.4 84 54.8
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.4e-19 99.4 134 41.0
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 4.0e-19 98.6 127 42.5
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 5.3e-19 98.2 129 44.2
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.2e-18 97.1 134 40.3
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.2e-18 97.1 139 40.3
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.5e-18 96.7 132 41.7
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 2.0e-18 96.3 133 38.3
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.0e-18 96.3 126 40.5
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.6e-18 95.9 145 38.6
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 3.4e-18 95.5 136 37.5
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.5e-18 95.1 133 41.4
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 7.6e-18 94.4 130 41.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 7.6e-18 94.4 79 54.4
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.3e-17 93.6 125 40.0
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 3.8e-17 92.0 130 40.0
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.8e-17 92.0 81 54.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 8.4e-17 90.9 130 38.5
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 8.4e-17 90.9 133 38.3
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.4e-16 90.1 130 36.9
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.5e-16 89.4 125 39.2
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.5e-16 89.4 87 44.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 7.1e-16 87.8 130 36.2
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 7.1e-16 87.8 143 35.7
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.6e-15 86.7 80 46.2
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 2.7e-15 85.9 133 38.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.6e-15 85.1 103 45.6
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 7.9e-15 84.3 73 52.1
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.0e-14 82.4 130 37.7
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.9e-14 82.0 126 37.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 5.1e-14 81.6 129 34.1
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 6.7e-14 81.3 88 39.8
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 7.4e-13 77.8 129 34.1
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.6e-12 76.6 210 28.1
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.8e-12 75.9 122 34.4
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 2.8e-12 75.9 124 38.7
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 2.4e-11 72.8 122 34.4
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.2e-10 70.5 129 32.6
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 7.6e-10 67.8 93 38.7
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.2e-09 66.2 45 66.7
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.9e-09 65.9 45 66.7
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 5.0e-09 65.1 122 33.6
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.1e-08 63.9 102 36.3
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 7.9e-07 57.8 32 78.1
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.3e-06 57.0 30 83.3
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.3e-06 57.0 74 45.9
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.3e-06 56.2 38 68.4
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.1e-06 55.1 35 68.6


User provided reference genes

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