Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.1e-122 441.4 225 100.0
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 9.8e-84 313.9 221 77.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 6.7e-48 194.9 215 50.7
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 8.7e-48 194.5 220 50.9
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 7.4e-47 191.4 206 51.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 3.7e-46 189.1 220 51.4
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 4.8e-46 188.7 224 47.3
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.8e-45 186.8 220 47.3
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-45 186.8 212 50.9
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-45 186.8 212 50.9
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.8e-45 186.8 212 50.9
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.9e-45 184.9 212 47.6
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.2e-44 184.1 193 52.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.5e-44 183.7 214 49.1
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.0e-44 183.3 225 48.9
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 2.0e-44 183.3 219 47.5
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.4e-44 182.6 222 48.6
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 4.5e-44 182.2 219 46.6
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 7.6e-44 181.4 216 45.8
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.7e-43 180.3 216 49.5
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.2e-43 179.9 216 49.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 6.5e-43 178.3 208 50.0
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.4e-42 177.2 217 47.0
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.4e-42 177.2 199 50.3
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.4e-42 177.2 225 46.2
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.9e-42 176.8 218 47.7
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.2e-42 175.6 222 45.0
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.5e-42 175.3 205 49.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 5.5e-42 175.3 219 45.7
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.5e-42 175.3 218 47.7
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.2e-41 174.1 207 49.3
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.1e-41 173.3 212 48.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.5e-41 172.6 218 47.2
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 6.0e-41 171.8 213 46.9
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 7.9e-41 171.4 212 44.8
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.0e-40 171.0 212 44.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.0e-40 171.0 202 47.5
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.3e-40 170.6 213 42.7
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.8e-40 170.2 213 44.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.8e-40 170.2 214 43.9
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.0e-40 169.5 209 47.4
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.1e-40 168.7 206 47.1
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 5.1e-40 168.7 219 45.2
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.7e-40 167.9 209 45.9
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.1e-39 167.5 210 45.2
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.1e-39 167.5 213 45.1
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.1e-39 167.5 210 46.7
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-39 167.5 212 45.3
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.5e-39 167.2 212 42.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.9e-39 166.8 208 48.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-38 163.7 212 42.5
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.1e-38 163.3 219 44.7
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 2.1e-38 163.3 218 42.7
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.1e-38 163.3 222 43.2
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.1e-38 163.3 210 45.2
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 2.8e-38 162.9 212 46.2
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 2.8e-38 162.9 219 43.4
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 3.7e-38 162.5 208 45.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 4.8e-38 162.2 212 43.9
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.1e-37 161.0 229 43.7
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.8e-37 160.2 210 44.8
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.8e-37 160.2 220 45.5
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.8e-37 160.2 210 44.3
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.4e-37 159.8 199 47.2
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.4e-37 159.8 220 43.2
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.4e-37 159.8 191 48.2
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.1e-37 159.5 204 43.1
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.1e-37 159.1 213 44.1
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 6.9e-37 158.3 213 43.7
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 6.9e-37 158.3 213 43.2
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 6.9e-37 158.3 220 43.2
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 9.0e-37 157.9 199 44.2
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 9.0e-37 157.9 219 42.9
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.5e-36 157.1 213 43.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.0e-36 156.8 210 44.3
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.6e-36 156.4 210 41.9
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.6e-36 156.4 205 42.9
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.6e-36 156.4 213 42.7
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 3.4e-36 156.0 209 45.9
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 5.9e-36 155.2 219 44.3
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 5.9e-36 155.2 223 43.5
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.0e-35 154.5 219 42.5
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.3e-35 154.1 219 43.8
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.3e-35 154.1 211 41.7
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 3.8e-35 152.5 205 45.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 5.0e-35 152.1 211 44.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 6.5e-35 151.8 220 40.9
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 8.4e-35 151.4 212 42.9
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.1e-34 151.0 212 41.0
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 2.5e-34 149.8 212 40.6
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 4.2e-34 149.1 199 41.7
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.2e-33 147.5 227 41.0
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.2e-33 147.5 199 44.2
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.6e-33 147.1 221 41.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.1e-33 146.7 210 40.5
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 3.5e-33 146.0 198 44.9
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 3.5e-33 146.0 227 40.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.0e-32 144.4 199 43.7
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.3e-32 144.1 212 39.6
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.3e-32 144.1 215 41.4
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.0e-32 142.9 199 40.7
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.5e-31 140.6 225 39.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.5e-31 139.8 204 40.7
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.3e-31 139.4 212 39.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 3.3e-31 139.4 211 39.3
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 3.3e-31 139.4 225 40.9
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.3e-31 139.0 211 39.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 5.7e-31 138.7 212 39.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 4.8e-30 135.6 185 42.7
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.1e-29 134.4 196 41.8
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.8e-29 133.7 211 38.4
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.8e-29 133.7 211 37.9
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.4e-29 133.3 212 38.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.4e-29 133.3 212 38.2
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 4.1e-29 132.5 213 39.4
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 5.3e-29 132.1 221 36.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.5e-28 130.6 211 37.4
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.6e-28 129.8 211 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 6.1e-25 118.6 213 35.7
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.8e-24 117.1 200 36.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 4.3e-23 112.5 206 35.0
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 7.4e-23 111.7 93 57.0
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.8e-22 109.0 199 35.7
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.5e-20 104.0 204 34.3
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.5e-20 104.0 204 34.3
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.0e-19 101.3 170 36.5
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.3e-16 90.1 193 32.6
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.2e-10 68.6 45 62.2
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 3.6e-09 66.2 133 37.6
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 6.7e-08 62.0 114 36.8
CiPaw.09G063400 Carya illinoinensis HOM05D001439 ORTHO05D002726 6.3e-06 55.5 71 39.4
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 8.2e-06 55.1 71 40.8
Nitab4.5_0000621g0070 Nicotiana tabacum HOM05D001439 ORTHO05D002726 8.2e-06 55.1 74 41.9
Nitab4.5_0005191g0050 Nicotiana tabacum HOM05D001439 ORTHO05D002726 8.2e-06 55.1 74 41.9


User provided reference genes

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