Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G055 Amborella trichopoda HOM05D005441 ORTHO05D006879 2.1e-57 225.3 105 100.0
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 1.6e-12 76.3 83 43.4
SalBow6G5479 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.6e-12 76.3 82 43.9
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 8.0e-12 73.9 59 57.6
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 1.4e-11 73.2 75 42.7
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 1.8e-11 72.8 40 72.5
SGA_v2.0_scaffold105G30361 Striga asiatica HOM05D005441 ORTHO05D006879 1.8e-11 72.8 40 75.0
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 3.0e-11 72.0 52 57.7
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 3.0e-11 72.0 42 71.4
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 3.0e-11 72.0 40 72.5
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 4.0e-11 71.6 65 50.8
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 4.0e-11 71.6 50 62.0
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 5.2e-11 71.2 40 72.5
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 6.8e-11 70.9 43 62.8
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 6.8e-11 70.9 61 49.2
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 8.8e-11 70.5 49 59.2
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 8.8e-11 70.5 49 59.2
Zm00001eb311530 Zea mays HOM05D005441 ORTHO05D006879 8.8e-11 70.5 41 68.3
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 1.2e-10 70.1 41 65.9
Aqoxy1G03762 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.5e-10 69.7 49 61.2
Ca_27959_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 2.0e-10 69.3 49 57.1
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 2.0e-10 69.3 61 47.5
unitig_22.g6054 Utricularia gibba HOM05D001412 ORTHO05D002473 2.0e-10 69.3 40 67.5
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 2.6e-10 68.9 40 67.5
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.6e-10 68.9 49 59.2
Aqoxy5G02961 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 2.6e-10 68.9 49 59.2
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 2.6e-10 68.9 40 67.5
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 2.6e-10 68.9 40 70.0
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 2.6e-10 68.9 40 70.0
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 2.6e-10 68.9 40 65.0
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 2.6e-10 68.9 52 53.8
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 2.6e-10 68.9 40 70.0
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 2.6e-10 68.9 41 65.9
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 2.6e-10 68.9 52 55.8
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 3.4e-10 68.6 40 67.5
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 3.4e-10 68.6 69 46.4
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 3.4e-10 68.6 40 67.5
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 3.4e-10 68.6 40 67.5
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 3.4e-10 68.6 45 60.0
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 4.4e-10 68.2 40 67.5
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 4.4e-10 68.2 40 70.0
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 4.4e-10 68.2 40 67.5
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 4.4e-10 68.2 40 67.5
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 5.7e-10 67.8 40 67.5
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 5.7e-10 67.8 40 67.5
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 5.7e-10 67.8 79 45.6
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 5.7e-10 67.8 40 65.0
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 5.7e-10 67.8 44 63.6
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 5.7e-10 67.8 40 67.5
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 5.7e-10 67.8 40 67.5
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 5.7e-10 67.8 40 67.5
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 5.7e-10 67.8 51 52.9
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 5.7e-10 67.8 54 51.9
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 7.5e-10 67.4 72 43.1
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 7.5e-10 67.4 40 65.0
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 7.5e-10 67.4 40 67.5
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 7.5e-10 67.4 42 66.7
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 7.5e-10 67.4 40 65.0
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 7.5e-10 67.4 40 67.5
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 67.5
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 67.5
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 67.5
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 65.0
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 62.5
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 65.0
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 67.5
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 9.8e-10 67.0 40 65.0
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 1.3e-09 66.6 40 65.0
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.3e-09 66.6 53 52.8
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.3e-09 66.6 40 65.0
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 1.3e-09 66.6 40 65.0
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 1.3e-09 66.6 51 56.9
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 1.3e-09 66.6 40 65.0
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.7e-09 66.2 40 67.5
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.7e-09 66.2 40 65.0
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.7e-09 66.2 40 62.5
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 1.7e-09 66.2 40 62.5
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 1.7e-09 66.2 49 53.1
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 1.7e-09 66.2 51 56.9
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 2.2e-09 65.9 40 67.5
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 2.2e-09 65.9 71 46.5
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 2.2e-09 65.9 80 41.2
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 2.2e-09 65.9 49 55.1
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 2.8e-09 65.5 43 55.8
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 2.8e-09 65.5 40 62.5
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 2.8e-09 65.5 49 49.0
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 2.8e-09 65.5 40 65.0
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 2.8e-09 65.5 94 38.3
QL10p045538 Quercus lobata HOM05D005441 ORTHO05D006879 2.8e-09 65.5 87 39.1
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 2.8e-09 65.5 40 62.5
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 3.7e-09 65.1 40 65.0
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 3.7e-09 65.1 49 55.1
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 4.9e-09 64.7 40 62.5
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 4.9e-09 64.7 40 65.0
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 8.3e-09 63.9 49 57.1
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 1.1e-08 63.5 40 62.5
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 1.8e-08 62.8 52 50.0
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 4.1e-08 61.6 40 62.5
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 5.4e-08 61.2 40 62.5
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 7.0e-08 60.8 40 57.5
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 7.0e-08 60.8 59 45.8
Aqoxy1G03071 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 9.2e-08 60.5 43 60.5
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 9.2e-08 60.5 39 61.5
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 9.2e-08 60.5 42 57.1
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 1.2e-07 60.1 38 57.9
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 1.2e-07 60.1 40 57.5
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 1.6e-07 59.7 40 65.0
Mapoly0006s0192 Marchantia polymorpha HOM05D005441 ORTHO05D006879 4.5e-07 58.2 40 52.5
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 4.5e-07 58.2 40 60.0
QL07p005351 Quercus lobata HOM05D005441 ORTHO05D006879 4.5e-07 58.2 40 60.0
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 5.9e-07 57.8 40 60.0
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 2.9e-06 55.5 32 65.6
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 8.6e-06 53.9 40 55.0


User provided reference genes

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