Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.4e-30 133.3 70 100.0
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 4.7e-24 114.0 66 92.4
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 7.4e-22 106.7 66 84.8
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 7.4e-22 106.7 66 84.8
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 9.7e-22 106.3 66 83.3
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 1.3e-21 105.9 66 84.8
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.3e-21 105.9 66 84.8
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 83.3
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 84.8
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 83.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.7e-21 105.5 66 83.3
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.2e-21 105.1 66 83.3
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.2e-21 105.1 66 83.3
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 2.2e-21 105.1 66 83.3
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.2e-21 105.1 66 83.3
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.8e-21 104.8 68 80.9
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 2.8e-21 104.8 65 84.6
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.8e-21 104.8 66 83.3
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 2.8e-21 104.8 68 80.9
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 2.8e-21 104.8 66 80.3
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.7e-21 104.4 66 81.8
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.7e-21 104.4 66 81.8
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 3.7e-21 104.4 66 81.8
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 3.7e-21 104.4 68 79.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 3.7e-21 104.4 66 86.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 3.7e-21 104.4 66 81.8
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 4.8e-21 104.0 66 83.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 4.8e-21 104.0 66 81.8
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 4.8e-21 104.0 66 83.3
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 4.8e-21 104.0 66 80.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.3e-21 103.6 66 81.8
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 6.3e-21 103.6 66 80.3
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 6.3e-21 103.6 66 81.8
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 80.3
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 80.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 80.3
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 80.3
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 80.3
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 81.8
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 81.8
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 8.2e-21 103.2 66 81.8
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.1e-20 102.8 66 80.3
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.1e-20 102.8 66 81.8
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.1e-20 102.8 66 81.8
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.1e-20 102.8 66 80.3
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.1e-20 102.8 66 83.3
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 80.3
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 80.3
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 80.3
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 80.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 81.8
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 81.8
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.4e-20 102.4 66 80.3
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.8e-20 102.1 66 78.8
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.8e-20 102.1 66 80.3
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.8e-20 102.1 66 80.3
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.8e-20 102.1 66 80.3
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.8e-20 102.1 66 80.3
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.4e-20 101.7 66 80.3
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.4e-20 101.7 65 83.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.4e-20 101.7 66 80.3
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.4e-20 101.7 66 80.3
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.4e-20 101.7 66 80.3
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.4e-20 101.7 66 80.3
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 3.1e-20 101.3 66 80.3
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 3.1e-20 101.3 66 81.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.1e-20 101.3 66 78.8
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 3.1e-20 101.3 66 80.3
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 3.1e-20 101.3 66 78.8
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 80.3
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 78.8
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 4.1e-20 100.9 65 84.6
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 80.3
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 4.1e-20 100.9 66 80.3
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 5.3e-20 100.5 66 78.8
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 5.3e-20 100.5 66 80.3
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 77.3
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 78.8
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 6.9e-20 100.1 66 80.3
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 78.8
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 77.3
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 78.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 78.8
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 77.3
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 77.3
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 9.1e-20 99.8 66 80.3
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.2e-19 99.4 68 76.5
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 1.2e-19 99.4 66 75.8
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-19 99.4 66 77.3
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-19 99.4 66 77.3
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.2e-19 99.4 68 75.0
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.5e-19 99.0 66 77.3
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.5e-19 99.0 66 77.3
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.5e-19 99.0 66 78.8
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.6e-19 98.2 66 77.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.6e-19 98.2 66 80.3
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 3.4e-19 97.8 66 74.2
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 4.5e-19 97.4 66 77.3
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.5e-19 97.4 66 77.3
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 5.9e-19 97.1 66 78.8
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 5.9e-19 97.1 66 75.8
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 5.9e-19 97.1 66 74.2
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 7.7e-19 96.7 66 75.8
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 7.7e-19 96.7 66 77.3
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.0e-18 96.3 66 75.8
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.0e-18 96.3 66 77.3
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.3e-18 95.9 66 75.8
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.2e-18 95.1 68 70.6
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.2e-18 95.1 66 75.8
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 5.0e-18 94.0 66 72.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.5e-18 93.2 68 70.6
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.1e-17 92.8 66 71.2
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.1e-17 92.8 66 77.3
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.4e-17 92.4 66 74.2
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.9e-17 92.0 57 87.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 4.2e-17 90.9 66 68.2
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 5.5e-17 90.5 64 75.0
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 9.4e-17 89.7 65 69.2
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.1e-16 88.6 66 72.7
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 2.1e-16 88.6 66 71.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 3.6e-16 87.8 62 77.4
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.1e-16 87.0 66 62.1
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.0e-15 86.3 66 65.2
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 3.9e-15 84.3 63 69.8
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.8e-15 83.2 52 84.6
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.8e-13 77.4 56 78.6
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.5e-11 71.2 66 54.5
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 6.5e-10 67.0 66 60.6
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.2e-09 64.7 40 87.5
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 9.4e-09 63.2 51 56.9
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.6e-08 62.4 70 50.0
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.1e-08 62.0 35 82.9
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 6.1e-08 60.5 37 78.4
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 9.7e-06 53.1 33 81.8


User provided reference genes

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