Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 2.0e-46 188.7 95 100.0
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 2.4e-15 85.5 64 62.5
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 3.1e-15 85.1 58 65.5
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 2.0e-14 82.4 60 66.7
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 2.7e-14 82.0 58 67.2
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 3.5e-14 81.6 62 62.9
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 4.5e-14 81.3 65 60.0
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.9e-14 80.9 63 61.9
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 7.7e-14 80.5 64 56.2
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.0e-13 80.1 60 58.3
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 1.7e-13 79.3 66 54.5
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 1.7e-13 79.3 61 57.4
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.3e-13 79.0 57 66.7
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 3.8e-13 78.2 57 68.4
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 5.0e-13 77.8 60 61.7
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 6.5e-13 77.4 64 59.4
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 6.5e-13 77.4 59 62.7
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 6.5e-13 77.4 63 58.7
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 8.6e-13 77.0 60 60.0
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 1.1e-12 76.6 58 65.5
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.5e-12 76.3 60 61.7
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 1.9e-12 75.9 58 62.1
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 1.9e-12 75.9 64 53.1
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 1.9e-12 75.9 67 50.7
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 3.2e-12 75.1 63 57.1
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 4.2e-12 74.7 60 61.7
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 5.5e-12 74.3 73 53.4
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 5.5e-12 74.3 62 54.8
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 7.2e-12 73.9 63 54.0
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 7.2e-12 73.9 68 58.8
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 7.2e-12 73.9 60 60.0
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 9.5e-12 73.6 60 61.7
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 9.5e-12 73.6 53 64.2
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 9.5e-12 73.6 60 55.0
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 1.2e-11 73.2 63 54.0
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.2e-11 73.2 56 62.5
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.6e-11 72.8 60 58.3
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.6e-11 72.8 60 58.3
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 1.6e-11 72.8 60 58.3
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.6e-11 72.8 61 50.8
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.1e-11 72.4 60 58.3
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.1e-11 72.4 60 58.3
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.1e-11 72.4 60 58.3
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 2.1e-11 72.4 62 56.5
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 2.1e-11 72.4 68 51.5
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 2.1e-11 72.4 63 52.4
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.8e-11 72.0 66 51.5
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 2.8e-11 72.0 61 57.4
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 2.8e-11 72.0 61 59.0
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 2.8e-11 72.0 59 61.0
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.6e-11 71.6 61 60.7
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 4.7e-11 71.2 58 58.6
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 4.7e-11 71.2 60 60.0
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 6.1e-11 70.9 66 51.5
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 8.0e-11 70.5 65 52.3
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 8.0e-11 70.5 61 59.0
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 8.0e-11 70.5 61 59.0
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 8.0e-11 70.5 61 59.0
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 8.0e-11 70.5 57 63.2
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 1.0e-10 70.1 60 58.3
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 1.0e-10 70.1 60 58.3
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.0e-10 70.1 63 52.4
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.4e-10 69.7 61 59.0
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 1.8e-10 69.3 66 50.0
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 3.0e-10 68.6 59 61.0
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 4.0e-10 68.2 58 62.1
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 4.0e-10 68.2 58 62.1
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 4.0e-10 68.2 63 58.7
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 5.2e-10 67.8 64 51.6
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 6.8e-10 67.4 61 55.7
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 6.8e-10 67.4 62 51.6
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 6.8e-10 67.4 56 57.1
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 6.8e-10 67.4 57 56.1
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 1.2e-09 66.6 58 55.2
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 1.2e-09 66.6 59 59.3
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 1.2e-09 66.6 56 58.9
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 1.2e-09 66.6 60 53.3
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.5e-09 66.2 62 50.0
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.5e-09 66.2 48 64.6
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 2.0e-09 65.9 64 48.4
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 2.6e-09 65.5 58 60.3
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 2.6e-09 65.5 64 48.4
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 3.4e-09 65.1 68 52.9
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 9.8e-09 63.5 60 53.3
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 1.3e-08 63.2 47 66.0
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.7e-08 62.8 61 49.2
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 2.2e-08 62.4 51 58.8
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 2.8e-08 62.0 58 55.2
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 2.8e-08 62.0 64 46.9
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 6.3e-08 60.8 59 50.8
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 1.1e-07 60.1 46 60.9
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 3.1e-07 58.5 59 50.8
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 4.1e-07 58.2 57 56.1
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 7.0e-07 57.4 60 45.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 7.0e-07 57.4 58 51.7
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 9.2e-07 57.0 59 49.2
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.7e-06 55.5 45 62.2


User provided reference genes

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