Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0716G017 Amborella trichopoda HOM05D002283 ORTHO05D031098 4.1e-60 234.6 121 100.0
ATR0681G256 Amborella trichopoda HOM05D002283 ORTHO05D008228 3.2e-20 102.1 51 92.2
CSS0041455 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D008228 7.8e-19 97.4 51 86.3
TAR381G0970 Trochodendron aralioides HOM05D002283 ORTHO05D008228 7.8e-19 97.4 51 86.3
Oeu053621.1 Olea europaea HOM05D002283 ORTHO05D008228 1.7e-18 96.3 51 84.3
Cc10_g05000 Coffea canephora HOM05D002283 ORTHO05D008228 3.9e-18 95.1 51 84.3
PGR031G2095 Punica granatum HOM05D002283 ORTHO05D008228 5.0e-18 94.7 51 82.4
Hma1.2p1_0852F.1_g228560 Hydrangea macrophylla HOM05D002283 ORTHO05D008228 6.6e-18 94.4 51 82.4
CiPaw.07G174400 Carya illinoinensis HOM05D002283 ORTHO05D008228 8.6e-18 94.0 51 82.4
Eucgr.F02248 Eucalyptus grandis HOM05D002283 ORTHO05D008228 8.6e-18 94.0 51 82.4
MSTRG.25034 Avicennia marina HOM05D002283 ORTHO05D008228 1.1e-17 93.6 51 82.4
HanXRQChr12g0373001 Helianthus annuus HOM05D002283 ORTHO05D008228 1.1e-17 93.6 51 80.4
MELO3C016822.2 Cucumis melo HOM05D002283 ORTHO05D008228 1.5e-17 93.2 51 82.4
Nitab4.5_0003725g0080 Nicotiana tabacum HOM05D002283 ORTHO05D008228 1.5e-17 93.2 51 86.3
Sed0019553 Sechium edule HOM05D002283 ORTHO05D008228 1.9e-17 92.8 51 78.4
COL.COLO4_28501 Corchorus olitorius HOM05D002283 ORTHO05D008228 2.5e-17 92.4 51 80.4
Lsat_1_v5_gn_4_161560 Lactuca sativa HOM05D002283 ORTHO05D008228 2.5e-17 92.4 51 80.4
GSVIVG01009339001 Vitis vinifera HOM05D002283 ORTHO05D008228 2.5e-17 92.4 51 80.4
CsaV3_4G035080 Cucumis sativus L. HOM05D002283 ORTHO05D008228 3.3e-17 92.0 51 80.4
ECA232G3417 Erigeron canadensis HOM05D002283 ORTHO05D008228 3.3e-17 92.0 51 78.4
ECA232G3607 Erigeron canadensis HOM05D002283 ORTHO05D008228 3.3e-17 92.0 51 78.4
Lalb_Chr23g0267541 Lupinus albus HOM05D002283 ORTHO05D008228 3.3e-17 92.0 51 78.4
Duzib093G2145 Durio zibethinus HOM05D002283 ORTHO05D008228 4.3e-17 91.7 51 80.4
Thecc.08G088300 Theobroma cacao HOM05D002283 ORTHO05D008228 4.3e-17 91.7 51 78.4
Cpa.g.sc142.33 Carica papaya HOM05D002283 ORTHO05D008228 5.6e-17 91.3 51 80.4
Nitab4.5_0000497g0180 Nicotiana tabacum HOM05D002283 ORTHO05D008228 5.6e-17 91.3 51 80.4
vmacro18024 Vaccinium macrocarpon HOM05D002283 ORTHO05D008228 5.6e-17 91.3 51 80.4
PSO017G4753 Papaver somniferum HOM05D002283 ORTHO05D008228 7.3e-17 90.9 51 76.5
PSO170G4140 Papaver somniferum HOM05D002283 ORTHO05D008228 7.3e-17 90.9 51 76.5
PSO339G4044 Papaver somniferum HOM05D002283 ORTHO05D008228 7.3e-17 90.9 51 76.5
Os02g0555000 Oryza sativa ssp. japonica HOM05D002283 ORTHO05D008228 1.2e-16 90.1 51 78.4
Pp3c20_1680 Physcomitrium patens HOM05D002283 ORTHO05D008228 1.2e-16 90.1 51 80.4
Sed0020338 Sechium edule HOM05D002283 ORTHO05D008228 1.2e-16 90.1 51 76.5
AT5G22370 Arabidopsis thaliana HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 78.4
arahy.Tifrunner.gnm1.ann1.LY0THA Arachis hypogaea HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 76.5
arahy.Tifrunner.gnm1.ann1.Y06RFV Arachis hypogaea HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 76.5
CAN.G724.29 Capsicum annuum HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 82.4
Psat4g133760 Pisum sativum HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 76.5
QL12p038161 Quercus lobata HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 76.5
VMungo1309G2121 Vigna mungo HOM05D002283 ORTHO05D008228 1.6e-16 89.7 51 78.4
Aa31sc60G130 Aethionema arabicum HOM05D002283 ORTHO05D008228 2.1e-16 89.4 51 80.4
Thhalv10017005m.g Eutrema salsugineum HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 76.5
Glyma.06G046900 Glycine max HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 76.5
Gohir.A06G024300 Gossypium hirsutum HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 74.5
Gohir.D06G021400 Gossypium hirsutum HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 74.5
Gorai.010G026000 Gossypium raimondii HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 74.5
Medtr5g089950 Medicago truncatula HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 80.4
Medtr8g062340 Medicago truncatula HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 78.4
Solyc04g077790.3 Solanum lycopersicum HOM05D002283 ORTHO05D008228 2.8e-16 89.0 49 83.7
PGSC0003DMG400010619 Solanum tuberosum HOM05D002283 ORTHO05D008228 2.8e-16 89.0 49 83.7
TPR.G33904 Trifolium pratense HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 78.4
TPR.G38550 Trifolium pratense HOM05D002283 ORTHO05D008228 2.8e-16 89.0 51 78.4
Aqoxy6G02598 Aquilegia oxysepala HOM05D002283 ORTHO05D008228 3.6e-16 88.6 51 76.5
AL6G33390 Arabidopsis lyrata HOM05D002283 ORTHO05D008228 3.6e-16 88.6 51 76.5
CANSAT54G1334 Cannabis sativa HOM05D002283 ORTHO05D008228 3.6e-16 88.6 51 76.5
CANSAT54G3057 Cannabis sativa HOM05D002283 ORTHO05D008228 3.6e-16 88.6 51 76.5
Mapoly0032s0094 Marchantia polymorpha HOM05D002283 ORTHO05D008228 4.7e-16 88.2 51 76.5
Phvul.009G072100 Phaseolus vulgaris HOM05D002283 ORTHO05D008228 4.7e-16 88.2 51 76.5
Sp4g13660 Schrenkiella parvula HOM05D002283 ORTHO05D008228 4.7e-16 88.2 51 76.5
A05p14380 Brassica napus HOM05D002283 ORTHO05D031098 6.2e-16 87.8 51 72.5
BraA05t20366Z Brassica rapa HOM05D002283 ORTHO05D031098 6.2e-16 87.8 51 72.5
Lj1g0012643 Lotus japonicus HOM05D002283 ORTHO05D008228 6.2e-16 87.8 51 78.4
MD15G1068400 Malus domestica HOM05D002283 ORTHO05D008228 6.2e-16 87.8 51 74.5
Carub.0006s2012 Capsella rubella HOM05D002283 ORTHO05D008228 8.1e-16 87.4 51 76.5
Sabra14G0009600 Salix brachista HOM05D002283 ORTHO05D008228 1.1e-15 87.0 51 72.5
Sopen04g031400 Solanum pennellii HOM05D002283 ORTHO05D008228 1.1e-15 87.0 48 83.3
CARHR191160 Cardamine hirsuta HOM05D002283 ORTHO05D008228 1.4e-15 86.7 51 76.5
Cfa013773 Carpinus fangiana HOM05D002283 ORTHO05D008228 1.4e-15 86.7 51 74.5
Migut.C01163 Erythranthe guttata HOM05D002283 ORTHO05D008228 1.4e-15 86.7 51 74.5
Glyma.04G046100 Glycine max HOM05D002283 ORTHO05D008228 1.4e-15 86.7 51 72.5
TWI56G0347 Tripterygium wilfordii HOM05D002283 ORTHO05D008228 1.4e-15 86.7 51 74.5
Manes.18G046900 Manihot esculenta HOM05D002283 ORTHO05D008228 1.8e-15 86.3 51 72.5
Prupe.1G422300 Prunus persica HOM05D002283 ORTHO05D008228 1.8e-15 86.3 51 72.5
Hund05297 Selenicereus undatus HOM05D002283 ORTHO05D008228 1.8e-15 86.3 51 74.5
SEGI_20238 Sequoiadendron giganteum HOM05D002283 ORTHO05D008228 1.8e-15 86.3 49 79.6
Ca_02473_v3 Cicer arietinum L. HOM05D002283 ORTHO05D008228 2.3e-15 85.9 51 76.5
MBI06_g35524_MAGBIO Magnolia biondii HOM05D002283 ORTHO05D008228 2.3e-15 85.9 45 86.7
unitig_62.g23649 Utricularia gibba HOM05D002283 ORTHO05D008228 3.1e-15 85.5 51 76.5
HPP92_011874 Vanilla planifolia HOM05D002283 ORTHO05D008228 4.0e-15 85.1 50 72.0
FAN15G1368 Fragaria x ananassa HOM05D002283 ORTHO05D008228 5.2e-15 84.7 51 76.5
FAN20G0022 Fragaria x ananassa HOM05D002283 ORTHO05D008228 5.2e-15 84.7 51 76.5
FAN27G0731 Fragaria x ananassa HOM05D002283 ORTHO05D008228 5.2e-15 84.7 51 76.5
Sc02g0007930 Simmondsia chinensis HOM05D002283 ORTHO05D008228 8.9e-15 84.0 51 72.5
FvH4_2g33040 Fragaria vesca HOM05D002283 ORTHO05D008228 1.5e-14 83.2 51 74.5
FAN24G1428 Fragaria x ananassa HOM05D002283 ORTHO05D008228 1.5e-14 83.2 51 74.5
Potri.014G015700 Populus trichocarpa HOM05D002283 ORTHO05D008228 2.0e-14 82.8 51 70.6
ATR0564G481 Amborella trichopoda HOM05D000537 ORTHO05D000415 2.6e-14 82.4 134 43.3
BcaC02g11214 Brassica carinata HOM05D002283 ORTHO05D008228 4.4e-14 81.6 51 70.6
C04p19130 Brassica napus HOM05D002283 ORTHO05D008228 4.4e-14 81.6 51 70.6
BolC4t23446H Brassica oleracea HOM05D002283 ORTHO05D008228 4.4e-14 81.6 51 70.6
A05p14350 Brassica napus HOM05D002283 ORTHO05D008228 7.5e-14 80.9 51 70.6
BraA05t20364Z Brassica rapa HOM05D002283 ORTHO05D008228 7.5e-14 80.9 51 70.6
RcHm_v2.0_Chr6g0309671 Rosa chinensis HOM05D002283 ORTHO05D008228 9.8e-14 80.5 51 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1661 Anthoceros agrestis HOM05D002283 ORTHO05D008228 2.2e-13 79.3 50 70.0
Peaxi162Scf00081g02227 Petunia axillaris HOM05D002283 ORTHO05D008228 2.2e-13 79.3 45 82.2
SMO119G0294 Selaginella moellendorffii HOM05D002283 ORTHO05D008228 2.2e-13 79.3 56 66.1
Atru.chr13.837 Acer truncatum HOM05D002283 ORTHO05D008228 4.9e-13 78.2 50 74.0
CBR_g26460 Chara braunii HOM05D002283 ORTHO05D008228 4.9e-13 78.2 51 66.7
Actinidia16426 Actinidia chinensis HOM05D002283 ORTHO05D008228 6.4e-13 77.8 39 89.7
AUR62022473 Chenopodium quinoa HOM05D002283 ORTHO05D008228 6.4e-13 77.8 45 75.6
Duzib116G0103 Durio zibethinus HOM05D002283 ORTHO05D008228 8.3e-13 77.4 43 81.4
Lj4C71G18 Lonicera japonica HOM05D002283 ORTHO05D008228 1.1e-12 77.0 44 79.5
Lj8C156G11 Lonicera japonica HOM05D002283 ORTHO05D008228 1.1e-12 77.0 44 79.5
BcaB02g10377 Brassica carinata HOM05D002283 ORTHO05D008228 1.4e-12 76.6 46 73.9
DCAR_002068 Daucus carota HOM05D002283 ORTHO05D008228 1.4e-12 76.6 50 70.0
EL10Ac1g02374 Beta vulgaris HOM05D002283 ORTHO05D008228 2.4e-12 75.9 45 75.6
Rhsim08G0093300 Rhododendron simsii HOM05D002283 ORTHO05D008228 4.6e-11 71.6 39 82.1
SHI08418 Sapria himalayana HOM05D002283 ORTHO05D008228 1.4e-07 60.1 38 65.8
Cre02.g081200 Chlamydomonas reinhardtii HOM05D002283 ORTHO05D008228 2.3e-07 59.3 47 55.3
ClCG05G020630 Citrullus lanatus HOM05D002283 ORTHO05D008228 3.1e-07 58.9 36 72.2
Eucgr.F02247 Eucalyptus grandis HOM05D002283 ORTHO05D008228 6.8e-07 57.8 30 83.3
Haze_26372 Corylus avellana HOM05D002283 ORTHO05D008228 4.4e-06 55.1 53 45.3


User provided reference genes

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