Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.9e-222 775.4 539 100.0
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 4.7e-124 449.1 560 58.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.2e-122 444.5 552 63.0
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.7e-121 440.7 549 60.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.4e-120 436.8 559 58.9
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.6e-118 428.7 551 62.6
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.6e-118 428.3 551 62.6
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.9e-117 427.2 546 60.1
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.9e-117 427.2 556 65.1
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 5.2e-115 419.1 556 60.3
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.5e-114 417.5 546 59.0
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.0e-114 417.2 540 58.3
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.7e-113 414.1 552 61.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.7e-113 414.1 567 57.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.9e-113 413.3 549 59.9
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.4e-112 409.1 554 60.1
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 7.0e-112 408.7 547 58.0
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.0e-111 407.1 555 57.5
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.7e-111 406.8 552 59.4
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.6e-111 406.0 561 65.6
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 6.0e-111 405.6 565 57.0
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 7.8e-111 405.2 551 57.7
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.3e-110 404.4 564 58.5
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.9e-110 402.9 545 57.1
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 8.6e-110 401.7 554 59.7
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 4.3e-109 399.4 595 55.8
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.2e-108 397.9 550 59.3
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.6e-108 397.5 550 62.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.6e-108 396.4 552 65.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.8e-107 394.0 558 61.1
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.8e-107 394.0 543 58.6
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 2.3e-107 393.7 546 56.8
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 3.1e-107 393.3 553 61.5
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 8.9e-107 391.7 555 60.0
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.0e-106 390.6 552 58.7
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 2.6e-106 390.2 557 60.1
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 4.4e-106 389.4 540 58.9
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 7.5e-106 388.7 536 56.3
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.3e-105 387.9 540 58.3
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.7e-105 387.5 549 59.9
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 2.2e-105 387.1 546 59.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.7e-105 386.3 562 55.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.7e-105 386.3 568 61.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 8.3e-105 385.2 556 59.2
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.4e-104 383.6 553 56.6
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.4e-104 383.6 567 58.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 5.4e-104 382.5 549 59.2
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 9.2e-104 381.7 568 54.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.2e-103 381.3 551 58.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.1e-103 380.6 562 57.1
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.0e-102 378.3 555 58.6
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.7e-102 377.5 554 55.4
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 3.0e-102 376.7 552 56.9
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 3.0e-102 376.7 555 55.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.1e-102 375.9 552 61.8
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 6.6e-102 375.6 548 52.4
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 4.3e-101 372.9 562 59.1
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 5.6e-101 372.5 562 56.0
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 9.5e-101 371.7 551 59.9
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.2e-100 371.3 596 49.0
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.2e-100 371.3 548 59.1
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 8.1e-100 368.6 552 56.5
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 8.1e-100 368.6 581 57.0
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.1e-99 368.2 551 59.0
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.8e-99 367.5 555 58.6
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 4.0e-99 366.3 559 55.5
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.4e-98 362.8 551 54.3
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 5.8e-98 362.5 557 58.7
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.9e-97 359.4 563 54.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 8.3e-97 358.6 555 59.1
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 3.2e-96 356.7 568 55.3
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 4.1e-96 356.3 562 58.2
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 7.1e-96 355.5 553 56.4
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.2e-95 354.8 547 58.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 3.9e-94 349.7 547 54.7
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.1e-93 348.2 561 51.5
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.9e-93 347.4 546 57.0
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.3e-93 346.7 561 51.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 9.6e-93 345.1 547 57.6
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.2e-92 344.7 555 53.9
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.6e-92 344.4 554 55.2
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 2.8e-92 343.6 529 56.0
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 4.0e-91 339.7 556 58.3
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-90 337.8 553 53.5
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 2.0e-90 337.4 555 54.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 7.6e-90 335.5 564 52.3
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.9e-89 333.6 562 54.1
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-86 325.1 553 53.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 2.3e-86 323.9 556 56.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 3.3e-85 320.1 554 56.1
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 4.8e-84 316.2 556 56.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.1e-83 313.5 562 50.5
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 4.4e-82 309.7 553 54.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.2e-81 307.4 607 47.1
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.9e-81 306.2 207 84.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.2e-80 303.5 548 54.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 9.3e-80 302.0 209 84.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 4.0e-75 286.6 573 47.3
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 2.6e-74 283.9 559 46.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 7.6e-74 282.3 556 49.5
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.9e-73 280.4 486 51.9
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.1e-72 278.5 571 48.2
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.4e-72 277.3 172 83.1
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 3.2e-72 276.9 558 49.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 9.3e-72 275.4 551 49.9
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.2e-71 275.0 598 45.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.0e-70 271.9 562 45.9
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 3.9e-70 270.0 572 48.4
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.1e-70 269.6 577 44.2
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.1e-70 269.6 239 70.3
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 8.7e-70 268.9 593 51.8
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.1e-69 268.5 183 79.2
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.5e-69 268.1 603 45.3
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.9e-69 267.7 548 46.4
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 4.0e-67 260.0 468 51.9
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 9.0e-67 258.8 154 86.4
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 3.8e-65 253.4 551 47.7
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.1e-61 241.9 182 73.1
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.5e-61 241.5 465 49.5
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.7e-55 220.7 165 74.5
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.6e-55 219.9 493 57.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.8e-52 210.7 494 46.4
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 3.4e-50 203.8 536 40.3
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.3e-45 187.2 152 74.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 6.1e-39 166.4 122 76.2
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.5e-34 151.8 521 42.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 3.8e-33 147.1 446 41.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.7e-29 132.5 74 85.1
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.1e-27 129.0 201 56.2
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.4e-27 127.9 109 68.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 2.0e-26 124.8 231 44.2
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.9e-26 123.2 119 63.9
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 5.9e-26 123.2 81 71.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 8.5e-25 119.4 117 63.2
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.0e-23 112.8 106 58.5
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.4e-22 112.1 237 51.1
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-20 105.5 64 89.1
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-20 105.1 102 65.7
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.3e-20 102.8 96 65.6
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.1e-19 102.4 165 42.4
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 7.7e-18 96.3 103 63.1
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.0e-15 86.3 119 55.5
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-14 85.1 58 86.2
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 3.4e-13 80.9 86 58.1
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.7e-12 78.6 46 87.0
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.7e-10 69.7 73 60.3
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.7e-10 69.7 73 60.3
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.6e-09 66.6 119 53.8
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 8.6e-09 66.2 78 55.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 8.6e-09 66.2 79 53.2
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.5e-08 64.7 78 53.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 4.2e-08 63.9 75 54.7
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.6e-07 60.8 156 31.4
SEGI_19875 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.0e-06 59.3 89 50.6
SEGI_11586 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.2e-06 57.0 73 52.1


User provided reference genes

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