Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.7e-257 892.1 446 100.0
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 4.5e-173 611.7 426 71.8
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 7.7e-173 610.9 432 69.9
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.5e-171 605.9 416 73.3
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.2e-170 603.6 428 72.0
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 2.1e-170 602.8 416 73.3
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 6.8e-169 597.8 428 71.7
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 1.2e-168 597.0 416 71.4
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.5e-168 596.7 429 71.6
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 2.0e-168 596.3 416 71.6
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.0e-168 596.3 410 72.7
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 9.8e-168 594.0 424 71.2
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.2e-167 592.8 421 71.0
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 6.3e-167 591.3 424 70.0
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.8e-166 589.7 419 70.4
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 3.1e-166 589.0 420 70.7
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 4.1e-166 588.6 419 70.6
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 4.1e-166 588.6 428 68.7
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.4e-166 588.2 419 70.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.4e-166 588.2 419 70.9
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 7.0e-166 587.8 432 68.3
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 7.0e-166 587.8 419 70.9
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.0e-165 586.3 418 70.6
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 2.0e-165 586.3 406 72.2
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.0e-165 586.3 416 69.2
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 2.7e-165 585.9 418 69.6
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 3.5e-165 585.5 426 69.2
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 3.5e-165 585.5 426 69.2
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 3.5e-165 585.5 411 70.3
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 5.9e-165 584.7 416 69.0
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 5.9e-165 584.7 407 70.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 7.7e-165 584.3 424 69.1
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 1.0e-164 583.9 433 66.5
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.7e-164 583.2 417 69.8
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.7e-164 583.2 415 68.7
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 2.3e-164 582.8 410 69.5
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.9e-164 582.4 422 69.0
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 3.8e-164 582.0 420 69.3
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 1.1e-163 580.5 430 68.1
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.9e-163 579.7 417 69.1
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 1.9e-163 579.7 425 69.2
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 2.5e-163 579.3 413 69.5
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 4.2e-163 578.6 420 69.0
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 4.2e-163 578.6 410 69.8
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 4.2e-163 578.6 429 67.6
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 2.8e-162 575.9 414 69.1
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 2.8e-162 575.9 426 68.1
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 4.7e-162 575.1 418 69.9
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.4e-161 573.5 421 67.2
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.8e-161 573.2 418 68.7
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 1.8e-161 573.2 422 68.0
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 6.8e-161 571.2 425 68.5
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 8.9e-161 570.9 409 68.9
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.2e-160 570.5 412 69.4
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 2.6e-160 569.3 417 68.1
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 3.4e-160 568.9 420 68.1
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 4.4e-160 568.5 416 67.3
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 7.5e-160 567.8 430 66.3
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 7.5e-160 567.8 425 66.6
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 7.5e-160 567.8 414 68.1
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 9.8e-160 567.4 432 66.0
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 4.9e-159 565.1 414 68.4
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 3.1e-158 562.4 418 67.7
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 5.4e-158 561.6 411 68.6
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 9.2e-158 560.8 402 70.6
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 1.3e-156 557.0 433 65.8
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 1.7e-156 556.6 411 68.1
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.3e-156 556.2 404 67.6
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 2.9e-156 555.8 447 64.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 2.9e-156 555.8 409 67.5
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 5.0e-156 555.1 411 68.4
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 5.0e-156 555.1 430 63.7
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 6.6e-156 554.7 429 65.3
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 1.5e-155 553.5 432 64.1
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.9e-155 553.1 429 65.0
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 4.3e-155 552.0 449 63.3
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.2e-154 550.4 411 66.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 2.1e-154 549.7 421 65.3
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.4e-152 542.0 419 66.3
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.9e-151 539.3 406 68.7
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 2.7e-149 532.7 414 65.5
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 2.1e-146 523.1 428 63.6
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 3.1e-145 519.2 407 64.4
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 8.9e-145 517.7 446 59.9
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 4.4e-144 515.4 412 64.8
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 4.1e-142 508.8 496 56.5
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 8.3e-135 484.6 412 63.6
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 3.9e-124 449.1 462 53.0
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.2e-120 437.6 311 70.1
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 5.8e-120 435.3 322 68.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 7.6e-120 434.9 453 51.9
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 7.6e-120 434.9 453 51.9
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 5.8e-112 408.7 304 67.1
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 1.1e-110 404.4 312 63.1
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 9.0e-97 358.2 234 76.5
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 2.2e-95 353.6 414 46.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.1e-93 347.1 271 64.2
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 8.2e-90 335.1 258 63.6
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 1.2e-85 321.2 244 63.9
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 9.7e-83 311.6 197 77.7
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 5.0e-79 299.3 229 64.2
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.1e-78 298.1 424 43.2
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 3.9e-76 289.7 514 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.1e-73 280.0 396 41.9
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 8.0e-69 265.4 160 81.9
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 2.6e-64 250.4 160 74.4
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 4.7e-61 239.6 144 77.1
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.0e-39 168.7 159 58.5
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.2e-37 161.8 103 78.6
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.2e-32 145.2 344 34.0
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.0e-32 144.4 248 33.9
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 4.6e-24 116.7 67 77.6
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.6e-16 91.7 54 75.9
Os09g0338200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 7.1e-09 66.2 200 28.5
Os10g0435900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.7e-08 64.3 166 28.9
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.6e-08 63.5 200 28.0
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 6.0e-08 63.2 162 29.0
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 6.0e-08 63.2 162 29.0
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 2.3e-07 61.2 221 26.7
Os11g0630700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.9e-07 60.5 185 25.9
Cre03.g144284 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D000536 6.6e-07 59.7 167 26.3
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 6.6e-07 59.7 122 31.1
Zm00001eb047910 Zea mays HOM05D000563 ORTHO05D000536 8.7e-07 59.3 140 28.6
COL.COLO4_09091 Corchorus olitorius HOM05D002203 ORTHO05D002647 1.1e-06 58.9 219 24.2
Cpa.g.sc370.9 Carica papaya HOM05D002203 ORTHO05D002647 1.5e-06 58.5 217 24.4
Os10g0423800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.5e-06 58.5 162 27.8
Carub.0005s0951 Capsella rubella HOM05D000563 ORTHO05D000536 1.9e-06 58.2 235 23.0
Oeu041702.3 Olea europaea HOM05D002203 ORTHO05D002647 1.9e-06 58.2 212 24.1
Zm00001eb050730 Zea mays HOM05D000563 ORTHO05D000536 1.9e-06 58.2 166 26.5
Migut.D00299 Erythranthe guttata HOM05D002203 ORTHO05D002647 2.5e-06 57.8 170 25.3
Actinidia00755 Actinidia chinensis HOM05D002203 ORTHO05D002647 3.3e-06 57.4 217 24.4
HanXRQChr01g0003111 Helianthus annuus HOM05D002203 ORTHO05D002647 3.3e-06 57.4 226 23.9
Lj1g0011717 Lotus japonicus HOM05D002203 ORTHO05D002647 3.3e-06 57.4 219 25.1
Hma1.2p1_0257F.1_g103380 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 4.3e-06 57.0 162 24.7
DCAR_002731 Daucus carota HOM05D002203 ORTHO05D002647 5.6e-06 56.6 283 23.3
Nitab4.5_0000458g0070 Nicotiana tabacum HOM05D002203 ORTHO05D002647 5.6e-06 56.6 225 22.7
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 5.6e-06 56.6 92 32.6
HanXRQChr11g0336141 Helianthus annuus HOM05D002203 ORTHO05D002647 7.3e-06 56.2 226 22.6
SMO116G0461 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 7.3e-06 56.2 154 29.2
EL10As3g23353 Beta vulgaris HOM05D002203 ORTHO05D002647 9.6e-06 55.8 177 26.6
SGA_v2.0_scaffold138G35338 Striga asiatica HOM05D002203 ORTHO05D002647 9.6e-06 55.8 162 24.1


User provided reference genes

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