Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.3e-130 467.6 225 100.0
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.1e-73 279.6 215 60.0
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.5e-73 278.9 214 57.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 7.8e-73 277.7 215 56.7
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.0e-72 277.3 215 60.0
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.3e-72 276.2 214 57.0
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 8.6e-72 274.2 216 60.2
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.1e-71 273.9 216 59.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.1e-71 273.9 216 57.9
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.5e-71 273.5 214 57.5
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.9e-71 273.1 215 58.6
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.3e-71 271.9 218 58.3
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 5.6e-71 271.6 215 59.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.6e-71 270.8 218 57.8
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.2e-70 270.4 215 58.6
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.1e-70 269.6 216 58.3
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.7e-70 268.5 219 57.5
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.8e-69 266.5 215 55.8
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 2.4e-69 266.2 217 57.1
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 3.1e-69 265.8 216 57.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 4.0e-69 265.4 218 58.7
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 4.0e-69 265.4 215 58.1
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 5.2e-69 265.0 216 55.6
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 6.8e-69 264.6 218 56.4
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 6.8e-69 264.6 217 57.6
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.2e-68 263.8 214 56.1
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.2e-68 263.8 216 55.1
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.5e-68 263.5 215 55.3
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.5e-68 263.5 224 56.2
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.5e-68 263.5 215 56.7
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 2.0e-68 263.1 216 57.4
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.0e-68 263.1 216 55.6
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.0e-68 263.1 214 55.6
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.0e-68 263.1 215 54.9
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.6e-68 262.7 220 56.4
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 7.6e-68 261.2 215 57.2
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 7.6e-68 261.2 215 54.4
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 9.9e-68 260.8 215 55.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 2.2e-67 259.6 216 56.0
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.2e-67 259.6 194 62.9
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.2e-67 259.6 215 56.3
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.9e-67 259.2 216 56.9
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.9e-67 259.2 216 56.9
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 8.4e-67 257.7 215 57.2
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 8.4e-67 257.7 217 55.8
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.1e-66 257.3 216 55.1
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.1e-66 257.3 216 55.1
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.9e-66 256.5 236 55.5
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 3.2e-66 255.8 216 56.5
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.2e-66 255.8 215 52.6
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 3.2e-66 255.8 215 58.1
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 3.2e-66 255.8 216 53.7
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.2e-66 255.4 218 55.5
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.2e-66 255.4 216 54.2
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 4.2e-66 255.4 215 54.4
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 7.1e-66 254.6 215 54.9
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 9.3e-66 254.2 218 55.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.3e-66 254.2 215 54.4
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 9.3e-66 254.2 216 54.6
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.6e-65 253.4 224 53.1
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.1e-65 253.1 215 54.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.1e-65 253.1 224 53.1
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.7e-65 252.7 215 57.2
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.7e-65 252.7 216 52.8
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.7e-65 252.7 216 53.7
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 4.6e-65 251.9 216 54.6
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 7.8e-65 251.1 216 53.7
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.0e-64 250.8 216 54.2
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 6.6e-64 248.1 212 54.7
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.5e-63 246.9 224 53.1
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.9e-63 246.5 216 54.2
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.3e-63 245.7 219 56.2
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 5.6e-63 245.0 215 54.4
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 4.8e-62 241.9 215 52.6
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 4.8e-62 241.9 215 52.6
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.4e-61 240.4 216 52.3
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.8e-61 240.0 214 52.3
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.1e-61 239.2 199 57.8
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.6e-60 236.1 216 53.2
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 4.9e-59 231.9 259 45.6
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.9e-59 231.9 215 52.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.6e-57 226.9 227 49.3
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 2.3e-56 223.0 306 39.5
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.0e-56 222.6 201 51.2
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.4e-53 213.8 174 56.9
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 4.5e-52 208.8 215 47.4
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 4.9e-51 205.3 185 52.4
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 4.9e-51 205.3 216 46.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 6.4e-51 204.9 187 49.2
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 7.9e-49 198.0 228 43.4
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.1e-45 187.6 217 42.9
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 5.8e-44 181.8 217 43.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 3.2e-42 176.0 186 47.3
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 5.3e-37 158.7 190 44.2
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.0e-35 154.5 151 47.0
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.9e-35 152.9 186 44.6
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.4e-34 150.6 147 46.9
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.0e-32 142.9 130 50.8
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.9e-31 140.2 147 45.6
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 5.9e-28 128.6 128 45.3
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.9e-26 123.6 160 40.6
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.2e-26 122.9 132 46.2
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.8e-22 109.8 86 59.3
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 6.9e-21 105.1 89 51.7
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.5e-20 104.0 113 45.1
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 6.1e-17 92.0 216 25.9
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.8e-16 90.5 216 27.3
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 5.1e-16 89.0 216 25.9
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 8.8e-16 88.2 87 51.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.1e-15 87.8 193 27.5
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.1e-15 87.8 150 32.7
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.5e-15 87.4 216 26.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 2.0e-15 87.0 217 28.6
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 2.0e-15 87.0 193 29.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 2.6e-15 86.7 193 27.5
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.6e-15 86.7 216 25.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 4.4e-15 85.9 217 29.5
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 9.7e-15 84.7 216 26.4
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.3e-14 84.3 193 27.5
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 2.2e-14 83.6 193 26.4
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 2.2e-14 83.6 193 26.4
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 2.2e-14 83.6 216 26.9
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.2e-14 83.6 216 25.9
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 2.8e-14 83.2 216 25.5
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 2.8e-14 83.2 216 27.3
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 3.7e-14 82.8 216 26.4
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 4.8e-14 82.4 193 28.0
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 8.2e-14 81.6 216 26.4
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 8.2e-14 81.6 216 26.4
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 1.1e-13 81.3 219 28.8
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.8e-13 80.5 190 27.9
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.8e-13 80.5 195 29.2
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 4.1e-13 79.3 190 27.4
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 5.3e-13 79.0 82 42.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 5.3e-13 79.0 216 25.5
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 7.0e-13 78.6 218 28.0
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 9.1e-13 78.2 218 27.1
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 9.1e-13 78.2 218 26.6
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 9.1e-13 78.2 218 26.6
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 9.1e-13 78.2 218 26.6
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.2e-12 77.8 221 27.1
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.6e-12 77.4 216 24.5
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 2.0e-12 77.0 216 24.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 2.0e-12 77.0 216 25.9
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 2.0e-12 77.0 218 26.1
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.6e-12 76.6 206 26.7
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 3.5e-12 76.3 216 24.5
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 3.5e-12 76.3 216 23.6
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 4.5e-12 75.9 216 25.9
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.9e-12 75.5 215 26.5
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 5.9e-12 75.5 218 27.5
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 1.0e-11 74.7 63 46.0
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.0e-11 74.7 190 26.3
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.0e-11 74.7 216 25.0
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.3e-11 74.3 190 26.3
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.3e-11 74.3 190 26.3
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.7e-11 73.9 190 26.3
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 2.2e-11 73.6 216 24.1
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 2.9e-11 73.2 216 26.4
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 5.0e-11 72.4 208 26.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 8.5e-11 71.6 190 26.8
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.2e-10 69.7 66 45.5
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 4.2e-10 69.3 183 26.2
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 4.2e-10 69.3 190 27.4
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.2e-09 67.8 195 25.6
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 4.7e-09 65.9 56 55.4
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.4e-08 64.3 190 24.2
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.0e-08 63.2 105 30.5
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.8e-06 56.6 89 33.7


User provided reference genes

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