Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.5e-40 169.1 85 100.0
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.9e-36 154.1 85 88.2
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.4e-14 82.8 78 57.7
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.4e-13 78.2 77 55.8
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 5.9e-13 77.4 73 57.5
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.2e-12 75.5 74 58.1
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 3.8e-12 74.7 76 52.6
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.4e-11 72.8 72 54.2
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.5e-11 72.0 74 55.4
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 4.2e-11 71.2 76 52.6
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 7.2e-11 70.5 76 52.6
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.2e-10 69.7 74 51.4
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.2e-10 69.7 74 51.4
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.6e-10 69.3 74 51.4
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.1e-10 68.9 73 52.1
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.1e-10 68.9 75 53.3
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.1e-10 68.9 79 46.8
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.7e-10 68.6 73 54.8
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 4.6e-10 67.8 75 48.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.6e-10 67.8 72 52.8
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 7.9e-10 67.0 74 55.4
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-09 66.6 74 50.0
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.0e-09 66.6 76 50.0
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.4e-09 66.2 82 48.8
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.4e-09 66.2 79 46.8
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.8e-09 65.9 75 53.3
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.8e-09 65.9 75 53.3
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.8e-09 65.9 74 47.3
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.8e-09 65.9 74 52.7
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.8e-09 65.9 76 48.7
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.3e-09 65.5 74 47.3
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.3e-09 65.5 74 47.3
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.3e-09 65.5 77 55.8
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 2.3e-09 65.5 75 50.7
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.0e-09 65.1 77 48.1
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.0e-09 65.1 77 45.5
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.0e-09 65.1 74 50.0
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 5.1e-09 64.3 79 48.1
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 5.1e-09 64.3 84 45.2
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.7e-09 63.9 74 45.9
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 6.7e-09 63.9 74 47.3
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.7e-09 63.9 74 51.4
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 8.8e-09 63.5 77 54.5
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.1e-08 63.2 81 45.7
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.1e-08 63.2 74 48.6
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.5e-08 62.8 77 49.4
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.5e-08 62.8 77 48.1
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.9e-08 62.4 74 47.3
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.9e-08 62.4 74 48.6
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.9e-08 62.4 80 43.8
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.9e-08 62.4 74 47.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.9e-08 62.4 79 50.6
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.5e-08 62.0 78 46.2
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.5e-08 62.0 79 48.1
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 3.3e-08 61.6 84 47.6
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.3e-08 61.6 74 47.3
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.3e-08 61.6 74 44.6
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.7e-08 60.8 75 46.7
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.7e-08 60.8 78 47.4
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 7.4e-08 60.5 79 50.6
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.3e-07 59.7 75 49.3
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.3e-07 59.7 73 52.1
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.7e-07 59.3 74 47.3
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 2.2e-07 58.9 83 44.6
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.2e-07 58.9 79 49.4
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.2e-07 58.9 77 45.5
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.2e-07 58.9 77 44.2
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.8e-07 58.5 74 47.3
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.8e-07 58.5 80 43.8
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.7e-07 58.2 82 43.9
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 3.7e-07 58.2 77 42.9
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.7e-07 58.2 75 45.3
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 3.7e-07 58.2 74 45.9
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 3.7e-07 58.2 72 44.4
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 4.8e-07 57.8 74 47.3
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 4.8e-07 57.8 74 47.3
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.8e-07 57.8 70 45.7
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 4.8e-07 57.8 74 45.9
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.8e-07 57.8 75 42.7
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.8e-07 57.8 79 45.6
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 6.3e-07 57.4 81 43.2
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 8.2e-07 57.0 75 41.3
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 8.2e-07 57.0 77 44.2
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 1.1e-06 56.6 83 41.0
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.4e-06 56.2 78 42.3
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.4e-06 56.2 80 42.5
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.4e-06 56.2 77 44.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.4e-06 56.2 72 44.4
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.8e-06 55.8 77 42.9
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.8e-06 55.8 79 48.1
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.8e-06 55.8 91 40.7
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.8e-06 55.8 91 40.7
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.8e-06 55.8 74 47.3
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.8e-06 55.8 76 44.7
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.4e-06 55.5 74 41.9
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 3.1e-06 55.1 79 39.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.1e-06 55.1 80 43.8
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 3.1e-06 55.1 89 39.3
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.1e-06 54.7 79 46.8
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 4.1e-06 54.7 74 47.3
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 5.3e-06 54.3 80 42.5
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.3e-06 54.3 80 42.5
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 5.3e-06 54.3 74 41.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 5.3e-06 54.3 74 44.6
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 5.3e-06 54.3 76 40.8
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 6.9e-06 53.9 74 43.2
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 6.9e-06 53.9 92 35.9
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 6.9e-06 53.9 79 46.8
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 9.1e-06 53.5 80 40.0
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 9.1e-06 53.5 81 39.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 9.1e-06 53.5 74 45.9
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 9.1e-06 53.5 77 41.6
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 9.1e-06 53.5 80 40.0


User provided reference genes

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