Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.2e-138 496.5 249 100.0
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.5e-35 152.1 132 56.8
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 2.7e-34 149.8 130 58.5
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 3.6e-34 149.4 130 58.5
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.6e-34 149.4 148 52.7
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.5e-32 144.1 132 53.8
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 2.5e-32 143.3 132 55.3
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 9.7e-32 141.4 135 54.8
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.7e-31 140.6 132 53.0
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 2.2e-31 140.2 127 54.3
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 2.8e-31 139.8 132 53.0
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.1e-30 137.9 134 53.0
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.4e-30 136.7 134 52.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 2.4e-30 136.7 132 53.0
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 3.1e-30 136.3 132 51.5
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 3.1e-30 136.3 132 50.8
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 3.1e-30 136.3 134 51.5
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 4.1e-30 136.0 131 51.9
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 5.3e-30 135.6 131 50.4
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 6.9e-30 135.2 201 42.3
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 6.9e-30 135.2 127 51.2
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 9.1e-30 134.8 143 50.3
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 2.0e-29 133.7 192 42.2
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.4e-29 132.9 134 51.5
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 5.9e-29 132.1 142 48.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 7.7e-29 131.7 132 50.0
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 7.7e-29 131.7 132 49.2
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 7.7e-29 131.7 138 50.0
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.7e-28 130.6 137 49.6
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.7e-28 130.6 130 50.8
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 2.2e-28 130.2 136 50.0
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 2.9e-28 129.8 143 46.2
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 2.9e-28 129.8 145 49.0
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.0e-28 129.0 125 53.6
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 8.5e-28 128.3 167 46.1
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 8.5e-28 128.3 132 48.5
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 8.5e-28 128.3 190 43.2
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 1.1e-27 127.9 135 48.1
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.9e-27 127.1 122 52.5
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.5e-27 126.7 119 53.8
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 3.2e-27 126.3 131 46.6
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 3.2e-27 126.3 131 46.6
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.2e-27 125.9 121 52.9
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 7.2e-27 125.2 161 41.6
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 7.2e-27 125.2 131 45.0
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 9.4e-27 124.8 180 39.4
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.6e-26 124.0 128 48.4
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.6e-26 124.0 131 45.8
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 3.6e-26 122.9 121 52.1
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 4.7e-26 122.5 117 52.1
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.7e-26 122.5 131 46.6
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 6.1e-26 122.1 155 44.5
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 7.9e-26 121.7 192 39.1
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.0e-25 121.3 121 52.1
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.4e-25 120.9 187 39.6
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.4e-25 120.9 126 44.4
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.4e-25 120.9 209 39.2
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 1.4e-25 120.9 127 48.0
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.8e-25 120.6 134 44.8
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 3.0e-25 119.8 121 50.4
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.9e-25 119.4 115 49.6
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 3.9e-25 119.4 115 49.6
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 3.9e-25 119.4 132 49.2
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 8.8e-25 118.2 133 45.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 8.8e-25 118.2 118 50.0
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.5e-24 117.5 115 49.6
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 2.0e-24 117.1 121 47.1
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 2.6e-24 116.7 132 46.2
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 3.3e-24 116.3 119 51.3
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 4.4e-24 115.9 118 49.2
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 4.4e-24 115.9 118 48.3
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.4e-24 115.9 118 48.3
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 4.4e-24 115.9 115 50.4
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 7.4e-24 115.2 187 38.5
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.7e-23 114.0 117 49.6
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 1.7e-23 114.0 117 45.3
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.8e-23 113.2 117 42.7
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 3.7e-23 112.8 123 45.5
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 6.3e-23 112.1 118 47.5
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 8.2e-23 111.7 190 36.8
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.1e-22 111.3 122 51.6
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 1.4e-22 110.9 127 47.2
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.8e-22 110.5 122 47.5
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 1.8e-22 110.5 114 50.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.1e-22 109.8 122 45.1
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 5.3e-22 109.0 116 50.9
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 7.0e-22 108.6 116 48.3
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 7.0e-22 108.6 117 46.2
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 7.7e-21 105.1 121 45.5
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.7e-20 104.0 132 43.2
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.7e-20 104.0 154 37.0
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 6.5e-20 102.1 131 43.5
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 8.5e-20 101.7 100 53.0
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 1.9e-19 100.5 100 51.0
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 4.2e-19 99.4 100 51.0
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 4.2e-19 99.4 100 51.0
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 4.2e-19 99.4 100 51.0
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 2.7e-18 96.7 132 41.7
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 2.7e-18 96.7 107 47.7
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 6.1e-18 95.5 124 37.9
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.8e-17 94.0 119 41.2
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 3.0e-17 93.2 77 58.4
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.6e-16 90.1 141 39.7
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.1e-14 84.7 82 47.6
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.8e-14 84.0 115 40.9
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 5.3e-14 82.4 122 38.5
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 7.7e-13 78.6 75 49.3
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.8e-12 76.3 69 44.9
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.7e-10 69.3 52 61.5
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 3.3e-08 63.2 83 43.4
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 4.4e-08 62.8 53 50.9
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.7e-07 60.8 55 49.1
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 1.4e-06 57.8 55 50.9
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.4e-06 57.8 58 46.6
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 3.1e-06 56.6 50 50.0
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 9.1e-06 55.1 55 45.5


User provided reference genes

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