Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 4.9e-94 347.8 178 100.0
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.1e-36 156.4 155 60.6
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 1.9e-26 123.2 156 47.4
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 4.3e-26 122.1 155 50.3
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 7.4e-26 121.3 158 48.1
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 7.4e-26 121.3 158 48.1
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 7.4e-26 121.3 158 48.1
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 7.4e-26 121.3 158 48.1
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 7.4e-26 121.3 158 48.1
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 9.7e-26 120.9 156 47.4
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.7e-25 120.2 157 49.0
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 2.2e-25 119.8 159 48.4
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 2.2e-25 119.8 162 48.1
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 2.8e-25 119.4 157 47.8
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 2.8e-25 119.4 157 47.8
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 3.7e-25 119.0 157 47.8
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 3.7e-25 119.0 157 47.1
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 3.7e-25 119.0 158 46.2
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 3.7e-25 119.0 155 47.7
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 3.7e-25 119.0 155 47.7
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 3.7e-25 119.0 158 47.5
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 6.3e-25 118.2 158 46.8
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 8.2e-25 117.9 156 44.9
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.1e-24 117.5 154 47.4
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 1.1e-24 117.5 145 50.3
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 1.1e-24 117.5 156 46.8
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.1e-24 117.5 155 47.1
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.8e-24 116.7 158 44.9
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.8e-24 116.7 158 44.9
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.8e-24 116.7 158 44.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.8e-24 116.7 157 48.4
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 2.4e-24 116.3 153 47.1
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 2.4e-24 116.3 158 46.2
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 3.1e-24 115.9 159 45.3
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 3.1e-24 115.9 158 45.6
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 3.1e-24 115.9 157 45.9
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 3.1e-24 115.9 156 45.5
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 4.1e-24 115.5 158 46.2
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 4.1e-24 115.5 158 45.6
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 4.1e-24 115.5 143 47.6
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 5.3e-24 115.2 159 47.2
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 5.3e-24 115.2 158 45.6
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 5.3e-24 115.2 156 46.2
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 5.3e-24 115.2 156 46.2
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 5.3e-24 115.2 158 48.1
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 9.1e-24 114.4 157 45.9
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 9.1e-24 114.4 155 45.8
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 1.2e-23 114.0 159 45.9
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.5e-23 113.6 155 45.8
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 2.0e-23 113.2 156 44.2
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 2.0e-23 113.2 159 45.3
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 2.6e-23 112.8 157 45.9
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 2.6e-23 112.8 158 44.3
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 2.6e-23 112.8 156 44.9
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 2.6e-23 112.8 158 46.8
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 3.4e-23 112.5 157 45.9
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 3.4e-23 112.5 156 44.9
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 3.4e-23 112.5 158 44.3
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 3.4e-23 112.5 156 44.2
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 3.4e-23 112.5 157 43.3
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 4.5e-23 112.1 155 45.2
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 5.9e-23 111.7 155 45.2
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 5.9e-23 111.7 155 45.2
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 5.9e-23 111.7 156 45.5
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 7.7e-23 111.3 157 47.1
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 7.7e-23 111.3 157 43.9
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 7.7e-23 111.3 143 46.2
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.0e-22 110.9 156 44.9
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.3e-22 110.5 158 44.3
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.3e-22 110.5 157 47.1
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.3e-22 110.5 145 47.6
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.7e-22 110.2 154 43.5
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 1.7e-22 110.2 157 44.6
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.2e-22 109.8 158 44.9
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.2e-22 109.8 157 46.5
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 2.2e-22 109.8 155 44.5
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 3.8e-22 109.0 145 46.2
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 3.8e-22 109.0 156 44.9
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 5.0e-22 108.6 145 45.5
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 6.5e-22 108.2 145 46.9
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 6.5e-22 108.2 156 44.2
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 6.5e-22 108.2 155 43.2
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 8.5e-22 107.8 157 43.9
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 8.5e-22 107.8 156 43.6
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 1.1e-21 107.5 145 46.9
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.1e-21 107.5 157 43.3
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.4e-21 107.1 65 81.5
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 1.4e-21 107.1 143 46.2
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.4e-21 107.1 143 45.5
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.4e-21 107.1 156 42.9
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 1.9e-21 106.7 153 43.8
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 4.2e-21 105.5 156 41.7
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 5.5e-21 105.1 145 45.5
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 5.5e-21 105.1 156 44.9
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 7.2e-21 104.8 155 43.9
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 4.7e-20 102.1 155 40.6
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 6.1e-20 101.7 143 42.7
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.8e-19 100.1 155 41.9
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 3.9e-19 99.0 156 42.3
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 3.9e-19 99.0 156 41.0
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 5.1e-19 98.6 153 41.8
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 8.8e-19 97.8 144 42.4
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.1e-18 97.4 147 42.2
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.7e-17 93.6 145 41.4
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 3.7e-17 92.4 140 43.6
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 3.7e-17 92.4 140 42.9
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 8.2e-17 91.3 65 69.2
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.1e-16 90.9 143 44.1
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.1e-16 90.9 65 67.7
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 1.8e-16 90.1 65 69.2
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 3.1e-16 89.4 65 67.7
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 4.1e-16 89.0 65 66.2
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 1.2e-15 87.4 65 64.6
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.5e-15 87.0 65 67.7
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 1.3e-14 84.0 65 63.1
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.8e-11 73.6 159 35.2
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.8e-11 73.6 48 70.8
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 1.4e-08 63.9 155 34.2
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 2.9e-06 56.2 146 39.0
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 6.5e-06 55.1 157 34.4


User provided reference genes

Program Settings