Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.2e-212 741.5 375 100.0
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 4.0e-138 495.4 363 71.3
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.7e-136 490.0 339 77.9
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.4e-135 486.9 353 71.7
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 1.8e-135 486.5 367 70.3
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 4.5e-134 481.9 375 67.7
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.0e-133 480.7 341 71.8
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.3e-133 480.3 334 73.4
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.7e-133 479.9 334 73.4
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 8.6e-133 477.6 367 67.3
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.1e-132 477.2 380 68.2
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.5e-132 476.9 367 67.3
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.9e-132 476.5 379 67.3
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.9e-132 476.5 339 72.0
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 3.3e-132 475.7 357 70.6
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 4.3e-132 475.3 375 66.9
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 5.6e-132 474.9 389 66.1
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 5.6e-132 474.9 344 73.0
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 7.3e-132 474.6 336 71.1
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 1.2e-131 473.8 374 66.8
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.6e-131 473.4 327 73.7
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.6e-131 472.2 342 71.3
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 3.6e-131 472.2 339 71.7
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 8.0e-131 471.1 332 72.0
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 8.0e-131 471.1 341 72.4
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 8.0e-131 471.1 357 70.3
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 8.0e-131 471.1 364 68.7
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.0e-130 470.7 332 72.3
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.0e-130 470.7 333 71.8
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.4e-130 470.3 373 69.7
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.4e-130 470.3 350 70.3
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 2.3e-130 469.5 346 70.2
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 4.0e-130 468.8 346 70.5
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 8.9e-130 467.6 348 72.1
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.5e-129 466.8 371 67.1
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.5e-129 466.8 338 74.6
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 2.0e-129 466.5 373 67.6
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 2.6e-129 466.1 338 71.3
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 3.4e-129 465.7 352 69.0
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 3.4e-129 465.7 336 72.3
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 4.4e-129 465.3 352 69.6
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 4.4e-129 465.3 352 69.6
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 4.4e-129 465.3 356 69.4
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 5.8e-129 464.9 332 72.0
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 5.8e-129 464.9 343 70.6
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 7.5e-129 464.5 374 65.2
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 9.8e-129 464.2 351 69.5
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 9.8e-129 464.2 377 67.1
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 9.8e-129 464.2 372 66.4
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.3e-128 463.8 344 71.5
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 1.3e-128 463.8 341 71.0
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 1.7e-128 463.4 377 66.8
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 2.2e-128 463.0 365 68.2
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 3.7e-128 462.2 330 71.8
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.7e-128 462.2 352 69.0
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 3.7e-128 462.2 355 69.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 4.9e-128 461.8 336 71.1
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 6.4e-128 461.5 351 69.8
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 6.4e-128 461.5 351 69.8
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 6.4e-128 461.5 363 68.0
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 1.1e-127 460.7 325 72.9
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.4e-127 460.3 340 70.6
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.9e-127 459.9 377 67.1
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 2.4e-127 459.5 334 72.2
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 4.1e-127 458.8 336 71.1
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 5.4e-127 458.4 362 67.1
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 7.0e-127 458.0 336 71.1
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 7.0e-127 458.0 376 65.7
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 9.2e-127 457.6 336 71.7
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 1.6e-126 456.8 377 63.1
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 1.6e-126 456.8 333 71.5
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 2.0e-126 456.4 365 66.8
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 2.7e-126 456.1 341 70.4
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 3.5e-126 455.7 331 71.6
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.5e-126 455.7 344 68.6
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 6.0e-126 454.9 333 71.5
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 7.8e-126 454.5 384 63.3
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 1.3e-125 453.8 352 68.5
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 1.7e-125 453.4 337 70.0
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 6.6e-125 451.4 335 71.6
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 2.5e-124 449.5 365 64.9
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 3.3e-124 449.1 376 64.9
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 7.3e-124 448.0 384 61.7
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.2e-123 447.2 356 67.7
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 8.0e-123 444.5 376 64.4
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 8.0e-123 444.5 323 70.3
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 3.4e-121 439.1 384 61.2
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 8.3e-120 434.5 362 63.5
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 8.3e-120 434.5 349 67.9
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 7.1e-119 431.4 330 69.4
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 9.2e-119 431.0 338 70.7
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.2e-118 430.6 325 69.2
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 6.0e-118 428.3 326 68.4
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 1.7e-117 426.8 310 71.3
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 8.6e-117 424.5 286 74.1
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 9.5e-116 421.0 285 74.4
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 3.6e-115 419.1 309 70.6
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.4e-114 417.2 279 76.0
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 1.8e-114 416.8 311 70.7
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.5e-113 413.7 311 70.4
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.5e-113 413.7 376 63.0
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 2.0e-113 413.3 329 67.8
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 7.3e-108 394.8 292 70.2
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 2.8e-107 392.9 290 70.0
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.2e-105 387.5 275 72.0
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 2.2e-104 383.3 286 68.9
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 2.4e-103 379.8 324 62.0
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 1.5e-97 360.5 235 78.7
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 5.8e-97 358.6 337 58.8
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 3.2e-87 326.2 254 64.6
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 3.5e-86 322.8 207 78.7
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 3.8e-80 302.8 297 56.2
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.4e-79 300.8 257 59.9
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 5.7e-76 288.9 259 57.5
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.8e-73 278.9 242 64.5
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.7e-68 262.3 247 58.7
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 5.7e-68 262.3 277 54.9
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 2.8e-67 260.0 193 68.9
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 3.2e-63 246.5 209 63.2
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 4.7e-54 216.1 157 75.2
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 3.7e-51 206.5 146 68.5
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 4.7e-46 189.5 134 73.1
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 3.0e-45 186.8 116 76.7
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 8.8e-45 185.3 161 62.1
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 3.3e-44 183.3 154 60.4
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 1.7e-43 181.0 110 81.8
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 1.0e-40 171.8 142 60.6
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 8.5e-40 168.7 142 59.9
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.4e-36 156.8 155 60.6
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 5.5e-31 139.4 109 68.8
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 7.2e-31 139.0 249 35.7
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 1.4e-29 134.8 256 34.0
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.0e-24 118.6 189 45.5
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 2.1e-22 110.9 241 30.7
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 5.2e-21 106.3 168 38.7
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 1.7e-19 101.3 74 66.2
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 1.2e-17 95.1 50 88.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.6e-17 93.2 69 72.5
ATR0709G026 Amborella trichopoda HOM05D005463 ORTHO05D068740 3.6e-14 83.6 76 63.2
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 8.9e-13 79.0 74 55.4
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 1.6e-09 68.2 114 41.2


User provided reference genes

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