Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.5e-141 506.1 257 100.0
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.3e-36 157.5 238 38.7
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.3e-35 152.5 232 40.5
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 7.4e-35 151.8 232 40.5
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 9.7e-35 151.4 233 38.2
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 4.8e-34 149.1 246 37.4
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 8.2e-34 148.3 234 39.3
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-33 147.9 204 39.7
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.2e-32 144.4 232 37.5
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.2e-32 144.4 242 38.8
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.5e-32 144.1 232 36.6
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.6e-32 143.3 234 38.5
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 5.9e-32 142.1 232 36.2
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 5.9e-32 142.1 239 37.2
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.0e-31 141.4 231 38.5
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.0e-31 141.4 232 36.6
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.0e-31 141.4 236 37.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.7e-31 140.6 234 38.0
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.2e-31 140.2 236 37.7
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.2e-31 140.2 236 36.9
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.9e-31 139.8 260 37.3
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.8e-31 139.4 244 36.9
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 3.8e-31 139.4 235 37.4
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 5.0e-31 139.0 236 36.9
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 8.5e-31 138.3 232 37.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.1e-30 137.9 237 36.7
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.5e-30 136.7 235 36.6
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 3.2e-30 136.3 233 35.6
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 5.5e-30 135.6 232 37.9
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.5e-30 135.6 232 35.8
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.5e-30 135.6 232 35.8
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 5.5e-30 135.6 232 36.2
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 9.3e-30 134.8 239 35.6
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 9.3e-30 134.8 232 36.2
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.6e-29 134.0 245 36.7
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.6e-29 134.0 239 35.6
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.6e-29 134.0 236 35.6
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 2.1e-29 133.7 232 36.6
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.7e-29 133.3 236 36.0
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.7e-29 133.3 213 37.6
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 2.7e-29 133.3 236 36.9
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.7e-29 133.3 236 35.6
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.7e-29 133.3 236 35.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 3.6e-29 132.9 255 35.3
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.6e-29 132.9 236 35.2
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.6e-29 132.9 236 35.2
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 3.6e-29 132.9 236 35.2
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.6e-29 132.5 232 36.2
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 4.6e-29 132.5 236 35.2
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 6.1e-29 132.1 229 36.2
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 6.1e-29 132.1 232 36.6
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 7.9e-29 131.7 233 36.5
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 7.9e-29 131.7 233 36.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.0e-28 131.3 245 35.5
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.0e-28 131.3 262 34.4
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.0e-28 131.3 233 37.8
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.0e-28 131.3 237 35.4
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.3e-28 131.0 237 35.4
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.3e-28 131.0 233 36.5
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.8e-28 130.6 236 35.6
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.8e-28 130.6 236 34.7
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.8e-28 130.6 231 35.9
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 2.3e-28 130.2 254 35.0
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.3e-28 130.2 229 34.9
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.3e-28 130.2 232 36.6
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 3.0e-28 129.8 232 34.5
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 3.0e-28 129.8 232 34.1
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 5.1e-28 129.0 228 34.6
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 5.1e-28 129.0 232 36.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 6.7e-28 128.6 234 36.8
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 6.7e-28 128.6 233 38.2
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.1e-27 127.9 232 34.9
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.5e-27 127.5 232 38.4
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.5e-27 127.5 232 36.6
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.9e-27 127.1 233 36.5
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.9e-27 127.1 233 36.1
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 1.9e-27 127.1 233 36.5
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.9e-27 127.1 233 36.5
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 1.9e-27 127.1 233 36.5
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 2.5e-27 126.7 233 36.5
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 2.5e-27 126.7 236 35.2
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 2.5e-27 126.7 231 35.1
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 2.5e-27 126.7 233 36.5
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 3.3e-27 126.3 231 36.4
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 3.3e-27 126.3 233 36.5
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.3e-27 126.3 258 31.0
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.3e-27 126.3 229 35.8
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 4.3e-27 125.9 250 33.6
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 5.7e-27 125.6 231 36.4
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 5.7e-27 125.6 232 34.9
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 7.4e-27 125.2 238 35.7
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 7.4e-27 125.2 230 34.8
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 7.4e-27 125.2 233 36.9
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 7.4e-27 125.2 231 32.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 9.7e-27 124.8 232 34.1
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.3e-26 124.4 232 35.8
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.6e-26 124.0 233 35.2
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 2.2e-26 123.6 188 41.5
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 2.8e-26 123.2 218 34.9
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.8e-26 123.2 194 38.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.8e-25 120.6 207 37.2
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.8e-25 120.6 249 34.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 2.4e-25 120.2 231 35.5
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 2.4e-25 120.2 225 34.2
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 2.4e-25 120.2 232 34.1
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 3.1e-25 119.8 234 34.2
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 4.1e-25 119.4 231 36.4
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.3e-25 119.0 220 35.9
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 5.3e-25 119.0 206 34.0
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.9e-25 118.6 225 32.4
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.0e-24 117.1 236 34.3
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.9e-24 115.5 260 33.8
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 1.7e-23 114.0 236 32.6
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 6.5e-23 112.1 232 32.3
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 6.5e-23 112.1 234 32.5
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.1e-22 111.3 210 34.8
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 2.5e-22 110.2 209 32.5
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.2e-21 107.8 234 32.5
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-21 106.7 147 40.1
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.7e-21 106.7 252 31.3
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.6e-21 105.9 234 32.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.0e-20 104.8 259 33.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 1.4e-20 104.4 222 32.0
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.8e-20 101.7 165 36.4
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 4.4e-19 99.4 234 32.9
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.1e-17 94.7 185 35.1
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.8e-17 94.0 240 30.0
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.6e-16 90.1 108 45.4
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 8.5e-15 85.1 189 33.3
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.2e-14 82.8 163 35.0
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.6e-13 79.7 131 37.4
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-10 70.5 194 33.5
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-10 70.5 194 32.0
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.7e-10 69.7 141 35.5
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 9.1e-09 65.1 159 36.5
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.2e-08 64.7 144 36.8
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 7.7e-08 62.0 123 33.3


User provided reference genes

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